otuSummary

R package of ‘otuSummary’

This package contains some functions which summarize the taxonomic composition, diversity at given taxonomic level, the contribution to beta diversity (Bray-Curtis dissimilarity) of the rare and abundant biospheres by using the OTU table which was generated either by qiime or mothur.

How to install this package from github?

if(!require(devtools)){
  install.packages("devtools")
  library(devtools)
} else {library(devtools)
}

install_github("cam315/otuSummary")

Check function list

library("otuSummary")
lsf.str("package:otuSummary")

About citation

citation("otuSummary")

Comments or suggestions

If you have any comments or suggestions, please do not be hesitate to post on my github or drop email to me.