netcutter development version

netcutter v0.3.1

• Use rlecuyer package to generate random numbers (avoids polluting the global environment)
• Fix automatic url in DESCRIPTION
• Use TRUE/FALSE instead of T/F

netcutter v0.3.0

• Introduce the terms_of_interest argument of nc_eval().
• Realize that the C++ speedup only worked for small-size matrices
• Devise algorithm that scales as (N + M) rather than (N * M), consequently drop Rcpp

netcutter v0.2.1

• Rewrite the edge-swapping algorithm in C++ (it’s now 20 times faster).
• Use combn() instead of expand.grid() in the internal function nc_define_modules().

As of today, the C++ version uses the old “Rounding” random sampler that R has used before version 3.6 (see here). This sampler is biased if the population size is large (some ppl say >1e7). Use v0.2.0 if you are concerned.

netcutter v0.2.0

• Fix p-values calculation: provide Pr(==k) and Pr(>=k).
• Add a mc.cores option to nc_eval()

The p-values calculation in previous releases was completely wrong: do not use releases older than v0.2.0!

netcutter v0.1.1

• Fix bug occurring when setting R to 1 (#1)
• Make nc_randomise() about two times faster
• Add a verbose option to nc_occ_probs()

netcutter v0.1.0

• Initial release.