pca.outlier: add prefix to ellipse to avoid conflict
with package car.corrgram.circle and corrgram.ellipse: move
‘scales’ into argument list.cl.auc: adjust auc:
if (auc < 0.5) auc <- 1 - aucaccest: Fix bugs and add more output.cl.roc: change output and fix bugs.cl.roc: add output of positive level.cl.perf: add confusion matrix, Kappa and positive
outputs.plsc: minor changes for returned component pls.out so
that R2 can be applied.plslda: minor changes for returned component pls.out so
that R2 can be applied.classifier: bugs fixdf.summ: add dots argument and modify an user-defined
function.stats.vec and stats.mat: summarising two
groups stats, such as p-values.fs.cl.2, perf and perf.aam:
internal functions (21-01-2014).shrink.listproprec.auto as hidden function and tidy uppval.reject: add na.rm = TRUE.grpplot: remove xlab and ylab inside.mdsplot and mds_plot_wrap
for MDS plotting.panel.elli and
panel.elli.1panel.outl for labelling data points outside
ellipse. They can be considered as outliers..path.package is defunct so use
path.package instead in csv2xls.pls:::coef.mvr replace coef.mvr since
it hides in the new version of ‘pls’.stats.mat and
stats.vec.stats.mat only.pca.outlier and
pca.outlier.1. The former is lattice version and the later
is the basic graphics version.stats.vec and
stats.mat. So the results are numeric, not character.melt and ddply with base R
functions. So no need to load two packages reshape and
plyr.randomForest
4.7.1 as requested.pca_plot_wrap,
mds_plot_wrap, lda_plot_wrap,
lda_plot_wrap_1 and pls_plot_wrap. (probably
.plot is the problem)lattice and latticeExtra. Also change author
item in DESCRIPTION.
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