MASS::polr(),
ordinal::clm() or ordinal::clmm()),
estimate_contrasts() and estimate_slopes()
with backend = "emmeans" now return probabilities by
default and for predict = "response", as
estimate_means() already does. Contrasts compare the focal
levels within each response category, and slopes are the slopes of the
probability of each response category. Before, both returned values on
the latent scale, and the table footer of
estimate_contrasts() said they were on the response scale.
The ordinal modes of emmeans ("prob",
"cum.prob", "exc.prob",
"linear.predictor", "latent" and
"mean.class") can be passed to predict. Use
predict = "latent" to get the former results.Post-processing in estimate_contrasts() including
group-variable (e.g.,
post_process = ~ pairwise | group_var) now no longer prints
levels from group_var in both the group and comparison
columns (i.e. redundant labels have been removed from the
output).
estimate_contrasts() with custom comparisons (e.g.,
when comparison = "(b1 - b12) = (b4 - b18)") can yield
incorrect results when estimate = "average" and predictions
are filtered (e.g. when contrast = c("x=c(2,4)")). This
does not happen in general, but may happen. Therefore, now an
informative warning is printed in such edge-cases.
Added a new vignette, “The Modelisation Approach”, which demonstrates a complete analytical workflow from setting up models using DAGs to extracting meaningful predictions, slopes, and interaction contrasts using modelbased post-estimation functions.
estimate_means() with
backend = "emmeans" now supports ordinal models, e.g. from
MASS::polr() or ordinal::clm().
predict accepts the ordinal modes of emmeans
("prob", "cum.prob", "exc.prob",
"linear.predictor", "latent" and
"mean.class"). For "prob", the output has one
row per response category, in a Response column. For
"cum.prob", "exc.prob" and
"linear.predictor", the output has one row per threshold,
in a Threshold column. For ordinal models, the default is
now predict = "prob", which returns the same probabilities
as the "marginaleffects" backend.
For ordinal models, plot() of
estimate_means() output with
backend = "emmeans" now maps the Response or
Threshold column to the color with one by
variable and to the facets with more. The "marginaleffects"
backend already does this for Response.
With backend = "emmeans", plot() now
shows predicted probabilities on a percent y-axis,
"cum.prob" and "exc.prob" included. This
applies to binomial, beta, ordinal, and multinomial models.
comparison = "ratio" is a new shortcut to compute
pairwise comparisons as ratios.
The printed footer of estimate_prediction() and
similar functions now names prediction intervals as such
(#485).
estimate_means(), estimate_contrasts()
and estimate_slopes() now filter the response categories of
ordinal models, for example from MASS::polr(),
ordinal::clm() or ordinal::clmm(). The filter
is a by term that names the response with values, for
example by = c("Infl", "Sat = 'Low'"). The output then has
only the rows of these response categories. The filter works with
backend = "emmeans" and predict = "prob" (the
default). Before, means and contrasts of factors ignored the filter, and
slopes and contrasts of slopes stopped with an unclear error. If
predict has another value, these functions now stop with a
clear error. If a value is not a response category, they also stop with
an error.
For non-linear models, the footer of predictions or contrasts on
the link-scale no longer says “FALSE-transformed” or “TRUE-transformed”.
This footer appears, for example, with estimate_link(), or
with estimate_means() and predict = "link".
Without transform, the footer now says “link-scale”. Except
with backend = "emmeans", a function as
transform gives “transformed link-scale”.
estimate_contrasts() with predict = "link" and
a function as transform (for example
transform = exp) no longer fails with an error. If the
output of an earlier call is the data argument, the footer
of estimate_expectation(),
estimate_prediction() and estimate_link() now
names the right scale.
With backend = "marginaleffects",
estimate_means(), estimate_slopes() and
estimate_contrasts() no longer drop or rename a
by variable with a name such as type,
n or value. They also no longer mislabel other
columns because of such a name. Before, for example,
estimate_means() dropped a by variable named
type and renamed n to n_Obs. It
also labeled a variable named Median as Mean,
and the means as Coefficient. This fix does not yet apply
to Bayesian models or to inequality comparisons (for example
comparison = "inequality").
Fixed printing error for brms-Wiener models without
component column.
With backend = "marginaleffects", a by
variable with the name of the estimate column (for example
Mean) or of the t column is now returned as
<name>.1. The output column keeps its name. This also
holds for p with estimate_slopes() and
estimate_contrasts(), and for SE,
CI_low and CI_high with
estimate_slopes(). Before, for example,
estimate_means() kept a by variable named
Mean and renamed the means to Mean.1, and
estimate_contrasts() renamed the p-values to
p.1. As for the fix above, this does not yet apply to
Bayesian models or to inequality comparisons. It also does not apply to
estimate_contrasts() on the output of
estimate_relation().
With backend = "marginaleffects",
estimate_means(), estimate_contrasts() and
estimate_slopes() now stop with an informative error when a
variable has a name that marginaleffects uses for its own
columns, and ask users to rename the variable. Before, these names gave
wrong estimates, standard errors or confidence intervals, missing
columns, or unclear errors. The names are:
by variables of estimate_means(), and of
estimate_contrasts() when the contrast variable is a
factor: Predicted, SE, CI_low,
CI_high, df, rowid and
s.value.contrast variable of
estimate_contrasts(): SE, CI_low,
CI_high, df and rowid.estimate_means() and
estimate_contrasts(): SE, CI_low,
CI_high and df.by variables of estimate_slopes():
df, rowid, s.value,
predicted, predicted_hi and
predicted_lo.Bayesian models are not checked yet. For them, these names can still give missing columns or unclear errors.
With backend = "marginaleffects",
estimate_contrasts() now returns a by variable
named Level1 or Level2 as
Level1.1 or Level2.1, next to the
Level1 and Level2 columns of the contrasts. It
also returns the contrasts for a by variable named
hypothesis and for a contrast variable named
Parameter. Before, the output had two columns with the same
name, the contrast labels were not split into Level1 and
Level2, or the call failed with an unclear error. If
<name>.1 is already a variable name, the suffix is
the next free number, for example p.2. As for the fixes
above, the Level1, Level2 and
hypothesis fixes do not yet apply to Bayesian models or to
inequality comparisons.
If a variable has the name of an output column,
estimate_contrasts() and estimate_slopes()
with backend = "marginaleffects" now keep the values and
the order of that column. This applies to the contrast
variable, and to by variables of contrasts and of contrasts
of slopes. It also applies to by variables of contrasts
with a custom comparison, for example
comparison = "b2=b1". Before, a contrast
variable named t turned the t column into a
factor. A contrast variable named p replaced
the p-values with missing values and moved the p column to
the front. In contrasts, a by variable named
Slope gave two Difference columns. In
contrasts of slopes, it replaced the differences with missing values.
With comparison = "ratio", a by variable named
Ratio or Slope gave two Ratio
columns. Now a by variable named Ratio becomes
Ratio.1 there.
estimate_slopes() with
backend = "marginaleffects" now adjusts the p-values for
p_adjust = "holm", "hochberg",
"hommel", "bonferroni", "BH",
"BY", "fdr", "sidak" and
"tukey". Before, all but "tukey" failed with
the error “replacement has 0 rows”, and "tukey" returned
the unadjusted p-values. For "tukey",
estimate_slopes() and get_marginaltrends() now
use the Sidak adjustment and say so in a message. The Tukey adjustment
is only appropriate for pairwise comparisons, but these slopes are each
tested against 0. emmeans::test() makes the same
substitution. Slopes that are compared, for example with the
comparison or post_process argument, keep the
Tukey adjustment.
estimate_means() with
backend = "emmeans" now shows the response level names for
models from ordinal::clmm(). Before, the
Response column showed 1, 2,
3, and the Threshold column showed
1|2, 2|3.
Fixed issue in estimate_contrasts() with wrong
assignment of estimates in custom comparisons (e.g., when
comparison = "(b1 - b12) = (b4 - b18)"), when some of the
indexed coefficients contained the same digit (in this case,
1 in b1 and b12).
Fixed issues in offset handling when the offset was specified via
the offset argument in the model call instead of inside the
formula.
Fixed issues with using offsets and predicting grand mean
(i.e. when model contains offset and by = NULL).
plot() now gives an informative error when there is
nothing to put on the x-axis, e.g. for predictions from intercept-only
models, or for estimate_prediction() without the
by argument.
Fixed an “invalid regular expression” error in
estimate_contrasts() for multivariate models (for example
from brms) with many observations.
estimate_contrasts() now uses the names of the response
variables, not their observed values, to find the response in the
contrast labels.
estimate_contrasts() now returns separate
Response1 and Response2 columns for
multivariate brms models with dots in the response names, for
example mvbind(Sepal.Length, Petal.Length) ~ Species.
Before, the response names stayed in the Level1 and
Level2 columns, because brms removes the dots from
the response names.
The grid argument of
visualisation_recipe() and plot() now changes
the facet grid of plots with four or more by variables.
Before, these functions applied the facet argument to the
facet grid instead. If facet was not set, grid
gave an error.
comparison argument in
estimate_contrasts() for backend = "emmeans"
now defaults to "revpairwise", to return consistent results
regarding the sign of contrasts with the "marginaleffects"
backend.For contrasts of models where predictions vary by response
category (e.g., categorical, ordinal/cumulative or multinomial models,
as well as multivariate response models),
estimate_contrasts() now returns separate
Response1 and Response2 columns instead of
merging the response category label into the Level1 and
Level2 columns (#646).
The iterations argument can now also be used for
Bayesian model in estimate_means(),
estimate_slopes(), and estimate_contrasts(),
which is then passed to the ndraws argument and controls
how many samples are drawn from the posterior when calculating marginal
means, effects or contrasts.
ci = NULL now suppresses calculation of standard
errors and confidence intervals.
The data argument can be used as an alias for
newdata in estimate_means(),
estimate_slopes(), and estimate_contrasts(),
and is passed to the related marginaleffects
functions.
Improved default settings for plots using
tinyplot():
facets now automatically remove redundant axes. If you
prefer to keep them, you can simply enable them by setting
frame = TRUE.xlim to
c(0.5, n + 0.5), the geoms are moved closer together,
resulting in a more compact appearance.tinyplot() for modelbased objects now
supports standard arguments following easystats conventions, allowing
for more fine-grained plot customizations (e.g., text/line sizes, color
palettes, and axis title sizes).
New options for printing (in particular, formatting CIs), see
also documentation
(?modelbased::"modelbased-options").
Improved documentation for estimate_means() and
vignettes about technical details of marginalization.
estimate_contrasts() with
backend = "emmeans" now correctly parses factor levels that
contain " - " in their names (e.g.,
"A - High", "B - Low"). emmeans wraps such
levels in parentheses (e.g., "(A - Low) - (A - High)"),
which is now handled properly (#649).
Fixed issue with estimate = "average" in
estimate_slopes() when no by variable was
specified and therefore no data grid created. This caused an issue with
filtering the output.
Informative error message when the trend variable in
estimate_slopes() is not numeric and
backend = "emmeans".
estimate_contrasts() gets a
post_process argument, to process subsequent comparisons.
It allows for complex, multi-step comparisons.
The comparison argument in
estimate_contrasts() can now also be
"omnibus", to calculate a global omnibus test for
differences between levels of a predictor.
Offsets (using the offset argument) now also work
when estimate is set to "population" or
"average".
Argument slope, when specific values are defined,
can now also be a list instead of only a string. E.g.,
slope="<variable> = seq(1, 3, 0.1)" can now also be
written as
slope=list(<variable> = seq(1, 3, 0.1)).
Clarified usage of marginal group-level estimates in
estimate_grouplevel(). The type argument can
now be used in combination with the estimate argument,
which is now also more explained in detail in the
documentation.
by = NULL now also works for
backend = "emmeans", to predict the grand mean.
Minor bug fix when evaluating slope and
by arguments in estimate_slopes().
get_emcontrasts(), get_emmeans() and
get_emtrends() (i.e., functions using
backend = "emmeans") now give an informative error message
when by, contrast, or trend refer
to a variable that is only used as random effects grouping factor (e.g.,
Subject in (1 | Subject)), instead of failing
with a cryptic error. Such variables can only be used with
backend = "marginaleffects".
join_dots in the plot() method,
which is used to connect dots with lines, now defaults to
FALSE.Support for models of class nestedLogit.
estimate_contrasts() can now also calculate
contrasts of average slopes, by defining two numeric predictors in the
contrast argument. This can also be useful when estimating
the context effects of within- and between-effects in a model.
The trend argument in estimate_slopes()
was renamed into slope. trend will remain as
alias.
New function collapse_by_group(), which extracts the
raw data points and “averages” (i.e. “collapses”) the response variable
over the levels of the grouping factor given in
collapse_by. Only works with mixed models. Additionally,
the plot() and visualization_recipe() methods
get a collapse_group argument to use this feature when
adding data points to plots using show_data or
show_residuals.
Fixed issue in estimate_slope() when
p_adjust = "esarey".
Fixed issue in estimate_contrasts() when
p_adjust = "tukey".
Fixed error with truncated message when standard errors could not be calculated.
The type argument in
estimate_grouplevel() gains a "marginal"
option, to return marginal group-levels estimates.
Added an as.data.frame() method for
modelbased objects.
Better formatting of the output for equivalence-tests, when the
equivalence argument was used. Related docs were added. It
is also possible to use parameters::equivalence_test() on
modelbased objects.
Function calls are now saved as call attribute in
modelbased objects.
More informative warnings and error messages were added to
estimate_contrasts() when computing effect sizes.
Improved plotting methods for the tinyplot package. The related vignette was also updated.
Methods for the tinyplot package were added.
estimate_slopes() now also gets the
estimate argument, to specify how to estimate / marginalize
over non-focal terms.
Improvements to estimate_contrasts():
comparison = "inequality" now also works when
contrasting slopes for a numeric predictor.
New option comparison = "inequality_ratio" for
estimate_contrast(), which computes the ratio of marginal
effects inequality measures across groups.
For contrasts, the message about the units of contrasts (“in %-points”) has been removed, because this was slightly misleading. The units were in %-points if multiplied by 100, but this multiplication was not done in the output.
estimate_contrasts() for slopes now allows
additional grouping of contrasts using the by argument
together with the comparison argument by specifying the
grouping variable in the formula,
e.g. contrast = c("x", "group") and
~ pairwise | group.
estimate_expectation() and
estimate_relation() now support objects of class
htest.
estimate_grouplevel() now supports models from
package coxme.
New function residualize_over_grid(), which
residualizes a model over a grid of predictors. This is useful to
visualize the residuals of a model over a grid of predictors.
visualisation_recipe() and plot() get a
show_residuals argument, to show the residuals of the
model, related to the data grid, in the plot.
Documentation of the display() method for
modelbased objects has been added.
Improved documentation and improved informative messages.
Message about unreliable standard errors (for certain models, when predicting random effects) was removed for now, as it is uncertain whether the standard errors were unreliable.
Modified code base to address changes in the marginaleffects package from version 0.29.0 onwards.
Fixed issue with by in
estimate_contrasts() when comparison was
"inequality".
Some comparison options, like "helmert" or
"poly", could not be specified as string-value, only as
formula. This has been fixed, so they can now be specified as
string-value, too.
In-formula transformations of predictors in by could
not be handled when by was not specified. This has been
fixed, and automatic detection of by variables now also
works with in-formula transformations.
The comparison argument gets two new option,
"inequality" and "inequality_pairwise", to
compute the marginal effects inequality measure, which summarizes the
the overall effect of categorical predictors or the comprehensive effect
of a predictor across all outcome categories of a nominal or ordinal
dependent variable.
Added docs to show how to use modelbased with finite mixture models from package brms.
Improved support for finite mixture models (currently only the
mixture() family for model from package brms are
supported).
Improved printing for joint-tests with
backend = "emmeans".
Improved handling when p-adjustment methods that are only available in the emmeans package were used for the marginaleffects backend.
The column header for the predicted values in
estimate_means() for multinomial models from packages
nnet and brglm2 has been changed to
Probability, to better reflect the scale of the
predictions.
New vignettes (Case Studies) about using modelbased with finite mixture models and interrupted time series analysis.
The p_adjust argument gets a new option,
"sup-t", to calculate simultaneous confidence
intervals.
Added a display() method for modelbased
objects.
Fixed printing and plotting for models from packages nnet and brglm2.
Fixed issues with object of class aov.
Fixed issue with the plot() method for
estimate_slopes() for Bayesian models.
estimate_contrasts() for results from
estimate_relation() and alike is now more efficient for
larger number of contrasts.
Updated information of citation(). If you want to
cite the modelbased package, please use the JOSS
publication as reference
(https://joss.theoj.org/papers/10.21105/joss.07969).
estimate_contrasts() for results from
estimate_relation().The comparison argument can now also be a custom
function, or a matrix (e.g., to define contrasts).
The comparison argument can now also be
"joint", to jointly test hypotheses (i.e. conducting a
joint test) in factorial designs.
New vignette about user-defined contrasts and joint tests in
estimate_contrasts().
pool_slopes(), to pool results from
estimate_slopes() applied to imputed data.reshape_grouplevel() now takes the correct number of
specified random effects groups into account when reshaping
results.In general, it is now possible to make estimate means, contrasts
and slopes for distributional parameters for models from package
brms using the predict argument.
estimate_grouplevel() gets arguments
test, dispersion and diagnostic,
that are internally passed to
parameters::model_parameters(), but with different
defaults.
estimate_prediction() and
estimate_relation() now support Wiener-models (Drift
Diffusion Models) from package brms.
estimate_prediction(),
estimate_relation() and similar functions now include the
Row column for models with ordinal or categorical response
variables when the data argument was provided.
estimate_slopes() can now also calculate average
marginal effects of a predictor, just for the trend of that predictor
within a certain range of values.
estimate_slopes() gets a predict
argument, to either select the scale of the estimates slopes, or to
estimate slopes (marginal effects) for distributional parameters of
brms models.
estimate_contrasts() gives an informative error
message when arguments by and contrast have
identical variables (which does not work).
Column names of predicted values for
backend = "emmeans" has changed for models like logistic
regression, or beta regression. Formerly, name was Mean,
now it is Probability or Proportion, depending
on the model.
Exposed iterations argument in
estimate_prediction() and
estimate_relation().
Option estimate = "average no longer prints
information on averaged predictors in the footer, because strictly, the
predictions are averaged over, and not the non-focal
variables.
Better handling for models with offsets in
estimate_means() and estimate_contrasts().
Informative messages are given when models include offset terms, and it
is possible to fix the offset value using the offset
argument. The offset argument is also available for
estimate_relation(), estimate_prediction() and
similar.
For consistency, estimate_slopes() now also uses the
residual degrees of freedom by default (like
estimate_means()) when calculating confidence intervals and
p-values.
Minor improvements to the documentation.
Fixed issues in estimate_grouplevel() for models
from package rstanarm.
Fixed issues in calculating correct confidence intervals (and
possibly p-values) for pooling functions pool_parameters()
and pool_predictions().
Fixed issue in estimate_means() for multivariate
response models from package brms.
Fixed issue with wrong y-axis label for plots from
estimate_slopes().
Fixed issue with weights in
estimate_relation().
Fixed issue in printed output for the statistic column, which
should be z for the marginaleffects backend,
when argument df = Inf.
The deprecated function visualisation_matrix() has
been removed. Use insight::get_datagrid() instead.
The "average" option for argument
estimate was renamed into "typical". The
former "average" option is still available, but now returns
marginal means fully averaged across the sample.
The transform argument now also works for
estimate_slopes() and for estimate_contrasts()
with numeric focal terms.
estimate_contrasts() no longer calls
estimate_slopes() for numeric focal terms when these are
integers with only few values. In this case, it is assumed that
contrasts of values (“levels”) are desired, because integer variables
with only two to five unique values are factor-alike.
estimate_contrasts: now supports optional
standardized effect sizes, one of “none” (default), “emmeans”, or
“bootES” (#227, @rempsyc).
The predict() argument for
estimate_means() gets an "inverse_link"
option, to calculate predictions on the link-scale and back-transform
them to the response scale after aggregation by groups.
estimate_means(), estimate_slopes() and
estimate_contrasts() get a keep_iterations
argument, to keep all posterior draws from Bayesian models added as
columns to the output.
New functions pool_predictions() and
pool_contrasts(), to deal with modelbased objects
that were applied to imputed data sets. E.g., functions like
estimate_means() can be run on several data sets where
missing values were imputed, and the multiple results from
estimate_means() can be pooled using
pool_predictions().
The print() method is now explicitly documented and
gets some new options to customize the output for tables.
estimate_grouplevel() gets a new option,
type = "total", to return the sum of fixed and random
effects (similar to what coef() returns for (Bayesian)
mixed models).
New option "esarey" for the p_adjust
argument. The "esarey" option is specifically for the case
of Johnson-Neyman intervals, i.e. when calling
estimate_slopes() with two numeric predictors in an
interaction term.
print_html() and print_md() pass
... to format-methods (e.g. to
insight::format_table()), to tweak the output.
The show_data argument in plot() is
automatically set to FALSE when the models has a
transformed response variable, but predictions were not back-transformed
using the transform argument.
The plot() method gets a
numeric_as_discrete argument, to decide whether numeric
predictors should be treated as factor or continuous, based on the of
unique values in numeric predictors.
Plots now use a probability scale for the y-axis for models whose response scale are probabilities (e.g., logistic regression).
Improved printing for estimate_contrasts() when one
of the focal predictors was numeric.
Fixed issue in the summary() method for
estimate_slopes().
Fixed issues with multivariate response models.
Fixed issues with plotting ordinal or multinomial models.
Fixed issues with ci argument, which was ignored for
Bayesian models.
Fixed issues with contrasting slopes when backend
was "emmeans".
Fixed issues in estimate_contrasts() when filtering
numeric values in by.
Fixed issues in estimate_grouplevel().
Fixed issue in estimate_slopes() for models from
package lme4.
The default package used for estimate_means(),
estimate_slopes() and estimate_contrasts() is
now marginaleffects. You can set your preferred package as
backend using either the backend argument, or in general by
setting options(modelbased_backend = "marginaleffects") or
options(modelbased_backend = "emmeans").
Deprecated argument and function names have been removed.
Argument fixed has been removed, as you can fix
predictor at certain values using the by argument.
Argument transform is no longer used to determine
the scale of the predictions. Please use predict
instead.
Argument transform is now used to (back-) transform
predictions and confidence intervals.
Argument method in estimate_contrasts()
was renamed into comparison.
All model_*() alias names have been removed. Use the
related get_*() functions instead.
The show_data argument in plot()
defaults to FALSE.
The "marginaleffects" backend is now fully
implemented and no longer work-in-progress. You can set your preferred
package as backend using either the backend argument, or in
general by setting
options(modelbased_backend = "marginaleffects") or
options(modelbased_backend = "emmeans").
All estimate_*() functions get a
predict argument, which can be used to modulate the type of
transformation applied to the predictions (i.e. whether predictions
should be on the response scale, link scale, etc.). It can also be used
to predict auxiliary (distributional) parameters.
estimate_means() and
estimate_contrasts() get a estimate argument,
to specify how to estimate over non-focal terms. This results in
slightly different predicted values, each approach answering a different
question.
estimate_contrasts() gains a backend
argument. This defaults to "marginaleffects", but can be
set to "emmeans" to use features of that package to
estimate contrasts and pairwise comparisons.
estimate_expectation() and related functions also
get a by argument, as alternative to create a datagrid for
the data argument.
Many functions get a verbose argument, to silence
warnings and messages.
estimate_contrasts() did not calculate contrasts for
all levels when the predictor of interest was converted to a factor
inside the model formula.
Fixed issue in estimate_contrasts() when
comparsison (formerly: method) was not
"pairwise".
3.6.Fixed issues with printing-methods.
Maintenance release to fix failing tests in CRAN checks.
visualisation_matrix() has now become an alias
(alternative name) for the get_datagrid()
function, which is implemented in the insight
package.API changes: levels in
estimate_contrasts has been replaced by
contrast. levels and modulate are
in general aggregated under at.
estimate_prediction() deprecated in favour of
estimate_response().
estimate_expectation() now has
data=NULL by default.
General overhaul of the package.
Entire refactoring of
visualisation_matrix().
Option of standardizing/unstandardizing predictions, contrasts
and means is now available via standardize() instead of via
options.
Introduction of model_emmeans() as a wrapper to
easily create emmeans objects.
estimate_smooth() transformed into
describe_nonlinear() and made more explicit.
estimate_link() now does not transform
predictions on the response scale for GLMs. To keep the previous
behaviour, use the new estimate_relation() instead. This
follows a change in how predictions are made internally (which now
relies on get_predicted(),
so more details can be found there).Predicted is now the name of the predicted column for
Bayesian models (similarly to Frequentist ones), instead of the
centrality index (e.g., Median).estimate_slope() now gives an informative error when no
numeric predictor is present.Partial support of formulas.
Refactor the emmeans wrapping.
parameters package update.NEWS.md file to track changes to the
package