mlstrOpalr 1.0.3 (release : 2024-05-01)

Bug fixes and improvements

• Some improvements in the documentation of the package has been made.
• Due to update in madshapR package, the name of objects used in examples has been changed (madshapR_DEMO instead of DEMO_files)

mlstrOpalr 1.0.2

Creation of NEWS feed !!

Addition of NEWS.md for the development version use “(development version)”.

Bug fixes and improvements

• Some improvements in the documentation of the package has been made.
• New information in the taxonomy added (description of each fields)

mlstrOpalr 1.0.0

This package is a collection of wrapper functions used in data pipelines connected to an Opal environment. This ‘Opal’ client is specifically designed to interact with ‘Opal Maelstrom’ distributions to perform operations on the R server side. The user must have adequate credentials. Please see Obiba website for complete documentation.

This is still a work in progress, so please let us know if you used a function before and is not working any longer.

Helper functions

• mlstrOpalr_help() Call the help center for full documentation

to connect to an Opal environment

• opal_project_create() Create a project in an Opal environment

• opal_files_pull(), opal_files_push() : Download/Upload files from/to an Opal environment.

• opal_tables_pull(), opal_tables_push() : Download/Upload tables from/to an Opal project as a dossier.

• taxonomy_opal_get() : Get available taxonomies in format used by Opal

• taxonomy_opal_mlstr_get(): Get available taxonomies in format used by Maelstrom Research

• data_dict_opalr_fix() Transform a data dictionary object from ‘opalr’ format to Opal format