microbiomeMQC: Calculate 4 Key Reporting Measures
Perform calculations for the WHO International Reference Reagents for the microbiome. Using strain, species or genera abundance tables generated through analysis of 16S ribosomal RNA sequencing or shotgun sequencing which included a reference reagent. This package will calculate measures of sensitivity, False positive relative abundance, diversity, and similarity based on mean average abundances with respect to the reference reagent.
| Version: | 1.0.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | readxl, vegan |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2024-09-16 |
| DOI: | 10.32614/CRAN.package.microbiomeMQC |
| Author: | Jacob Dehinsilu 
[aut, cre],
Ravneet Bhuller [aut] |
| Maintainer: | Jacob Dehinsilu <jacobdehinsilu at outlook.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | microbiomeMQC results |
Documentation:
| Reference manual: | microbiomeMQC.html , microbiomeMQC.pdf |
| Vignettes: |
Using microbiomeMQC (source, R code) |
Downloads:
| Package source: | microbiomeMQC_1.0.2.tar.gz |
| Windows binaries: | r-devel: microbiomeMQC_1.0.2.zip, r-release: microbiomeMQC_1.0.2.zip, r-oldrel: microbiomeMQC_1.0.2.zip |
| macOS binaries: | r-release (arm64): microbiomeMQC_1.0.2.tgz, r-oldrel (arm64): microbiomeMQC_1.0.2.tgz, r-release (x86_64): microbiomeMQC_1.0.2.tgz, r-oldrel (x86_64): microbiomeMQC_1.0.2.tgz |
Linking:
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