Set of tools for descriptive analysis of metaproteomics data generated from high-throughput mass spectrometry instruments. These tools allow to cluster peptides and proteins abundance, expressed as spectral counts, and to manipulate them in groups of metaproteins. This information can be represented using multiple visualization functions to portray the global metaproteome landscape and to differentiate samples or conditions, in terms of abundance of metaproteins, taxonomic levels and/or functional annotation. The provided tools allow to implement flexible analytical pipelines that can be easily applied to studies interested in metaproteomics analysis.
| Version: | 1.2.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ade4, dendextend, dplyr, ggforce, ggrepel, reshape2, stringr, tidyverse |
| Published: | 2021-02-05 |
| DOI: | 10.32614/CRAN.package.metaprotr |
| Author: | Aaron Millan-Oropeza [aut, cre], Catherine Juste [aut, ctb], Ariane Bassignani [aut, ctb], Céline Henry [aut, ctb] |
| Maintainer: | Aaron Millan-Oropeza <aaron.ibt at gmail.com> |
| License: | GPL-3 |
| URL: | https://forgemia.inra.fr/pappso/metaprotr |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | metaprotr results |
| Reference manual: | metaprotr.html , metaprotr.pdf |
| Package source: | metaprotr_1.2.2.tar.gz |
| Windows binaries: | r-devel: metaprotr_1.2.2.zip, r-release: metaprotr_1.2.2.zip, r-oldrel: metaprotr_1.2.2.zip |
| macOS binaries: | r-release (arm64): metaprotr_1.2.2.tgz, r-oldrel (arm64): metaprotr_1.2.2.tgz, r-release (x86_64): metaprotr_1.2.2.tgz, r-oldrel (x86_64): metaprotr_1.2.2.tgz |
Please use the canonical form https://CRAN.R-project.org/package=metaprotr to link to this page.
Need a high-speed mirror for your open-source project?
Contact our mirror admin team at info@clientvps.com.
This archive is provided as a free public service to the community.
Proudly supported by infrastructure from VPSPulse , RxServers , BuyNumber , UnitVPS , OffshoreName and secure payment technology by ArionPay.