Implementation of the 'MarkerPen' algorithm, short for marker gene detection via penalized principal component analysis, described in the paper by Qiu, Wang, Lei, and Roeder (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a semi-supervised algorithm for detecting marker genes by combining prior marker information with bulk transcriptome data.
| Version: | 0.1.2 |
| Depends: | R (≥ 4.3.0) |
| Imports: | Rcpp (≥ 1.0.1), RSpectra, stats |
| LinkingTo: | Rcpp, RcppEigen, RSpectra |
| Suggests: | knitr, rmarkdown, prettydoc, scales |
| Published: | 2025-12-14 |
| DOI: | 10.32614/CRAN.package.markerpen |
| Author: | Yixuan Qiu [aut, cre], Jiebiao Wang [aut], Jing Lei [aut], Kathryn Roeder [aut] |
| Maintainer: | Yixuan Qiu <yixuan.qiu at cos.name> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | markerpen results |
| Reference manual: | markerpen.html , markerpen.pdf |
| Vignettes: |
MarkerPen: Marker Gene Detection via Penalized Principal Component Analysis (source, R code) |
| Package source: | markerpen_0.1.2.tar.gz |
| Windows binaries: | r-devel: markerpen_0.1.2.zip, r-release: markerpen_0.1.2.zip, r-oldrel: markerpen_0.1.2.zip |
| macOS binaries: | r-release (arm64): markerpen_0.1.2.tgz, r-oldrel (arm64): markerpen_0.1.2.tgz, r-release (x86_64): markerpen_0.1.2.tgz, r-oldrel (x86_64): markerpen_0.1.2.tgz |
| Old sources: | markerpen archive |
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