Initial CRAN submission.
Internal changes:
-----------------
- Description file correction
· Edit package description (add reference)
- "vqsresub" function added
Internal changes:
-----------------
- Description file correction
· Abbreviation explained
- Unnecessary print() in all functions removed
Internal changes:
-----------------
- An option to compare viral quasispecies at amino acid level was added to
“vqscompare” function (“proteincoding” and “removestopcodon” arguments). - “AAcompare” function added to the package - Documentations updated - Reference in the DESCRIPTION file updated - Github link in README.md fixed
Internal changes:
-----------------
- pairwiseAlignment() has moved from Biostrings to the pwalign package.
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