leidenbase: R and C/C++ Wrappers to Run the Leiden find_partition() Function

An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from <https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from <https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>. Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.

Version:	0.1.36
Depends:	R (≥ 3.5.0)
Imports:	igraph (≥ 0.9.0)
Suggests:	rmarkdown, knitr, testthat (≥ 3.1.0), pandoc
Published:	2025-12-16
DOI:	10.32614/CRAN.package.leidenbase
Author:	Brent Ewing [aut, cre], Vincent Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Szabolcs Horvat [ctb], Fabio Zanini [ctb]
Maintainer:	Brent Ewing <bge at uw.edu>
BugReports:	https://github.com/cole-trapnell-lab/leidenbase/issues
License:	GPL-3
URL:	https://github.com/cole-trapnell-lab/leidenbase
NeedsCompilation:	yes
Materials:	NEWS
CRAN checks:	leidenbase results

Documentation:

Reference manual:	leidenbase.html , leidenbase.pdf
Vignettes:	leidenbase (source, R code)

Downloads:

Package source:	leidenbase_0.1.36.tar.gz
Windows binaries:	r-devel: leidenbase_0.1.36.zip, r-release: leidenbase_0.1.36.zip, r-oldrel: leidenbase_0.1.36.zip
macOS binaries:	r-release (arm64): leidenbase_0.1.36.tgz, r-oldrel (arm64): leidenbase_0.1.36.tgz, r-release (x86_64): leidenbase_0.1.36.tgz, r-oldrel (x86_64): leidenbase_0.1.36.tgz
Old sources:	leidenbase archive

Reverse dependencies:

Reverse imports:	monocle
Reverse suggests:	ClustAssess, DOtools, Seurat

Linking:

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