junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen (2018, <doi:10.1101/058107>) and Janzen (2022, <doi:10.1111/1755-0998.13519>).

Version:	2.1.4
Depends:	RcppParallel (≥ 5.0.0)
Imports:	nloptr, Rcpp, tibble
LinkingTo:	nloptr, Rcpp, RcppParallel
Suggests:	dplyr, ggplot2, knitr, magrittr, rmarkdown, testthat, tidyr
Published:	2026-03-07
DOI:	10.32614/CRAN.package.junctions
Author:	Thijs Janzen [aut, cre]
Maintainer:	Thijs Janzen <thijsjanzen at gmail.com>
BugReports:	https://github.com/thijsjanzen/junctions/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://thijsjanzen.github.io/junctions/
NeedsCompilation:	yes
SystemRequirements:	C++17
Citation:	junctions citation info
Materials:	README, NEWS
CRAN checks:	junctions results

Documentation:

Reference manual:	junctions.html , junctions.pdf
Vignettes:	Overview_of_the_junctions_package (source, R code) junctions (source, R code) phasing (source, R code)

Downloads:

Package source:	junctions_2.1.4.tar.gz
Windows binaries:	r-devel: junctions_2.1.4.zip, r-release: junctions_2.1.4.zip, r-oldrel: junctions_2.1.4.zip
macOS binaries:	r-release (arm64): junctions_2.1.4.tgz, r-oldrel (arm64): junctions_2.1.4.tgz, r-release (x86_64): junctions_2.1.4.tgz, r-oldrel (x86_64): junctions_2.1.4.tgz
Old sources:	junctions archive

Reverse dependencies:

Reverse suggests:

GenomeAdmixR

Linking:

Please use the canonical form https://CRAN.R-project.org/package=junctions to link to this page.