Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
| Version: | 0.1.3 |
| Imports: | magrittr, readxl, openxlsx, minpack.lm, zoo, stats, gridExtra, grid, parallel, readr, rlang, dplyr, stringr, tidyselect, ggplot2, purrr, forcats, tibble, tidyr |
| Suggests: | knitr, rmarkdown, markdown, qpdf |
| Published: | 2026-05-21 |
| DOI: | 10.32614/CRAN.package.htrSPRanalysis |
| Author: | Janice McCarthy Developer [aut, cre, cph], Kan Li Dev [aut], S. Moses Dennison [aut], Georgia D. Tomaras [aut] |
| Maintainer: | Janice McCarthy Developer <janice.mccarthy at duke.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | htrSPRanalysis results |
| Reference manual: | htrSPRanalysis.html , htrSPRanalysis.pdf |
| Vignettes: |
Introduction to htSPRanalysis (source, R code) |
| Package source: | htrSPRanalysis_0.1.3.tar.gz |
| Windows binaries: | r-devel: htrSPRanalysis_0.1.3.zip, r-release: htrSPRanalysis_0.1.3.zip, r-oldrel: htrSPRanalysis_0.1.3.zip |
| macOS binaries: | r-release (arm64): htrSPRanalysis_0.1.3.tgz, r-oldrel (arm64): htrSPRanalysis_0.1.3.tgz, r-release (x86_64): htrSPRanalysis_0.1.3.tgz, r-oldrel (x86_64): htrSPRanalysis_0.1.3.tgz |
| Old sources: | htrSPRanalysis archive |
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