haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous

Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

Version:	1.9.8.7
Depends:	R (≥ 4.4.0), methods, stats, graphics, arsenal, MASS
Suggests:	knitr, testthat
Published:	2026-04-25
DOI:	10.32614/CRAN.package.haplo.stats
Author:	Schaid Daniel [aut], Jason P. Sinnwell [aut, cre]
Maintainer:	Jason P. Sinnwell <sinnwell.jason at mayo.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://CRAN.R-project.org/package=haplo.stats
NeedsCompilation:	yes
Materials:	README, NEWS
CRAN checks:	haplo.stats results

Documentation:

Reference manual:	haplo.stats.html , haplo.stats.pdf
Vignettes:	The haplo.stats package (source, R code)

Downloads:

Package source:	haplo.stats_1.9.8.7.tar.gz
Windows binaries:	r-devel: haplo.stats_1.9.8.7.zip, r-release: haplo.stats_1.9.8.7.zip, r-oldrel: haplo.stats_1.9.8.7.zip
macOS binaries:	r-release (arm64): haplo.stats_1.9.8.7.tgz, r-oldrel (arm64): haplo.stats_1.9.8.7.tgz, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources:	haplo.stats archive

Reverse dependencies:

Reverse suggests:

gaawr2, gap, trio

Linking:

Please use the canonical form https://CRAN.R-project.org/package=haplo.stats to link to this page.