Complete Public API Map

This article is a discoverability index for the frozen development API. It groups every exported function by its primary interface role. Function names are linked by pkgdown to their full reference documentation. The map is not a recommendation to call every low-level adapter directly.

Audits

audit_backend_parity()
audit_design_support()
audit_duration_boundaries()
audit_duration_unit_invariance()
audit_estimand_invariance()
audit_fixed_effect_design()
audit_missingness_structure()
audit_model_readiness()
audit_model_readiness_strict()
audit_prediction_support()
audit_random_effects_support()

Checks

check_binary_posterior_predictive()
check_binary_ppc_details()
check_binary_prior_predictive()
check_cmdstan_backend()
check_duration_posterior_predictive()
check_duration_ppc_details()
check_duration_prior_predictive()
check_model_ppc()

Constructors and bundles

create_analysis_bundle()
create_analysis_figure_set()
create_analysis_manifest()
create_binary_model_report()
create_brms_sbc_plan()
create_complete_evidence_inventory()
create_contrast_coding_sensitivity_specification()
create_custom_sbc_plan()
create_diagnostic_dashboard()
create_diagnostic_dashboard_figures()
create_duration_model_report()
create_duration_unit_sensitivity_specification()
create_figure_set()
create_group_deletion_sensitivity_plan()
create_loo_influence_atlas()
create_model_card()
create_model_contract()
create_model_evidence_report()
create_model_specification()
create_prediction_contrast_profile()
create_prediction_grid()
create_prediction_profile()
create_prediction_surface()
create_predictive_distribution_atlas()
create_predictor_scaling_sensitivity_specification()
create_prior_specification()
create_publication_registry()
create_publication_table_set()
create_random_slope_sensitivity_plan()
create_reporting_checklist()
create_sensitivity_suite_plan()
create_transformation_recipe()

Execution workflows

run_binary_recovery()
run_duration_recovery()
run_group_deletion_sensitivity()
run_random_slope_sensitivity()
run_sbc_plan()
run_sensitivity_suite()

Explicit writers

write_analysis_bundle_report()
write_diagnostic_dashboard_report()
write_model_card()
write_publication_registry()
write_reproducibility_report()

Extraction

extract_expected_predictions()
extract_linear_predictions()
extract_log_likelihood()
extract_posterior_draws()
extract_posterior_predictions()
extract_sampler_diagnostics()

Freezing and reproducibility

freeze_analysis_manifest()
freeze_gp3bayes_schema()

Model fitting

fit_binary_model()
fit_binary_model_backend()
fit_binary_model_cmdstanr()
fit_duration_model()
fit_duration_model_backend()
fit_duration_model_cmdstanr()

Other public workflows

apply_transformation_recipe()
assess_binary_prior_sensitivity()
assess_duration_prior_sensitivity()
assess_powerscaled_sensitivity()
backend_capabilities()
bayesian_backend_capabilities()
binary_calibration_error()
binary_calibration_uncertainty()
binary_group_calibration()
binary_precision_recall_curve()
binary_prediction_scores()
binary_roc_curve()
binary_threshold_metrics()
build_model_formula()
capture_gp3bayes_schema()
collect_model_evidence()
compare_analysis_manifests()
compare_estimand_sensitivity()
compare_gp3bayes_schemas()
compare_psis_loo()
compute_kfold_cv()
compute_loo_model_weights()
compute_psis_loo()
compute_psis_loo_from_log_lik()
detect_binary_separation()
diagnose_binary_fit()
diagnose_duration_fit()
diagnose_model_fit()
duration_prediction_scores()
duration_quantile_calibration()
duration_tail_check()
estimate_model_estimands()
estimate_standardized_duration_estimands()
estimate_standardized_probability_contrast()
evaluate_pathological_simulation()
gp3bayes_specification_traceability()
group_prediction_summary()
grouped_prediction_check()
identify_identifier_like_predictors()
identify_loo_influential_observations()
identify_mcmc_issues()
interaction_prior_summary()
invert_transformation_recipe()
loo_flagged_data()
loo_influence_summary()
model_workflow_status()
posterior_predictive_statistic()
powerscale_sequence_for_fit()
preflight_model_specification()
prepare_hierarchical_binary_data()
prepare_hierarchical_duration_data()
prior_posterior_bridge()
prior_posterior_draws_long()
random_intercept_variance_partition()
register_publication_figure()
review_duration_extremes()
save_figure_set()
save_publication_registry_figures()
specify_binary_model()
specify_binary_model_with_interaction_prior()
specify_duration_model()
specify_duration_model_with_interaction_prior()
theme_gp3bayes()
translate_binary_model_to_brms()
translate_binary_model_with_interaction_prior()
translate_duration_model_to_brms()
translate_duration_model_with_interaction_prior()

Plots and graphics

plot_autocorrelation()
plot_backend_environment_gg()
plot_backend_parity_gg()
plot_binary_calibration()
plot_binary_calibration_uncertainty()
plot_binary_group_calibration()
plot_binary_precision_recall()
plot_binary_roc()
plot_binary_threshold_metrics()
plot_design_support_gg()
plot_diagnostic_dashboard()
plot_duration_pit()
plot_duration_qq()
plot_duration_quantile_calibration()
plot_duration_tail()
plot_estimand_intervals()
plot_estimand_sensitivity_gg()
plot_exceedance_probability()
plot_group_deletion_sensitivity()
plot_group_effect_distribution()
plot_group_effect_rank_probability()
plot_group_effects()
plot_group_predictions()
plot_grouped_prediction_check()
plot_loo_group_elpd()
plot_loo_group_influence()
plot_loo_influence()
plot_loo_influence_rank()
plot_loo_pareto_vs_elpd()
plot_loo_pointwise_elpd()
plot_manifest_comparison_gg()
plot_mcmc_quality()
plot_missingness_gg()
plot_model_comparison()
plot_model_evidence_gg()
plot_model_weights()
plot_posterior_areas()
plot_posterior_correlations()
plot_posterior_density()
plot_posterior_intervals()
plot_posterior_pairs()
plot_powerscale_sensitivity_gg()
plot_ppc_statistic()
plot_prediction_contrast_profile()
plot_prediction_draws()
plot_prediction_gradient()
plot_prediction_interval_width()
plot_prediction_intervals()
plot_prediction_profile()
plot_prediction_rank_probabilities()
plot_prediction_score_uncertainty()
plot_prediction_support()
plot_prediction_surface()
plot_prediction_surface_uncertainty()
plot_predictive_atlas_statistics()
plot_predictive_coverage()
plot_predictive_quantile_envelope()
plot_predictive_residuals()
plot_prior_posterior_contraction()
plot_prior_posterior_density()
plot_prior_posterior_intervals()
plot_prior_posterior_shift()
plot_prior_sensitivity()
plot_prior_sensitivity_scenarios()
plot_random_intercept_variance_partition()
plot_random_slope_sensitivity()
plot_rank_diagnostics()
plot_recovery_bias()
plot_recovery_coverage()
plot_recovery_estimates()
plot_recovery_fit_status()
plot_recovery_rmse()
plot_reporting_checklist()
plot_sampler_diagnostics()
plot_sampling_diagnostics()
plot_sbc_coverage_gg()
plot_sbc_ecdf_gg()
plot_sbc_rank_gg()
plot_sbc_simulated_vs_estimated_gg()
plot_schema_comparison_gg()
plot_sensitivity_suite_gg()
plot_uncertainty_decomposition()
plot_variance_components()

Prediction

predict_binary_probability()
predict_duration()
predict_model()
prediction_contrast()
prediction_draws_long()
prediction_exceedance_probability()
prediction_interval_width()
prediction_pairwise_contrasts()
prediction_rank_probabilities()
prediction_score_uncertainty()
prediction_uncertainty_decomposition()
predictive_quantile_envelope()
predictive_residuals()

Readers

read_analysis_manifest()
read_gp3bayes_schema()

Simulation

simulate_binary_pathology()
simulate_declared_prior_draws()
simulate_duration_pathology()
simulate_hierarchical_binary_data()
simulate_hierarchical_duration_data()

Summaries

summarise_binary_group_variation()
summarise_binary_posterior()
summarise_condition_balance()
summarise_duration_posterior()
summarise_estimand_draws()
summarise_mcmc_quality()
summarise_model_posterior()
summarise_sbc_result()
summarise_sensitivity_suite()

Tables and adapters

analysis_bundle_table()
analysis_manifest_table()
backend_environment_table()
backend_parity_table()
binary_calibration_table()
binary_calibration_uncertainty_table()
binary_confusion_table()
design_support_table()
diagnostic_dashboard_table()
duration_pit_table()
duration_qq_table()
estimand_sensitivity_table()
evidence_inventory_table()
group_deletion_sensitivity_table()
group_effect_draws_table()
group_effect_rank_probability_table()
group_effect_table()
loo_diagnostic_table()
loo_group_influence_table()
loo_influence_atlas_table()
loo_pointwise_table()
loo_summary_table()
manifest_comparison_table()
mcmc_diagnostic_table()
missingness_audit_table()
model_card_table()
model_comparison_table()
model_evidence_table()
model_weights_table()
posterior_correlation_table()
posterior_interval_table()
posterior_predictive_summary_table()
posterior_probability_table()
powerscale_sensitivity_table()
ppc_statistic_table()
prediction_contrast_profile_table()
prediction_gradient_table()
prediction_profile_table()
prediction_score_uncertainty_table()
prediction_support_table()
prediction_surface_table()
prediction_table()
predictive_coverage_table()
predictive_distribution_atlas_table()
prior_posterior_distance_table()
prior_posterior_summary_table()
prior_sensitivity_scenario_table()
prior_sensitivity_table()
prior_specification_table()
publication_registry_table()
random_intercept_variance_partition_table()
random_slope_sensitivity_table()
recovery_estimate_table()
recovery_fit_status_table()
recovery_parameter_table()
register_publication_table()
sampler_diagnostic_table()
sbc_overview_table()
sbc_stats_table()
schema_comparison_table()
sensitivity_suite_table()
variance_component_table()

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