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ggquickeda 0.3.3

fix issue when color was set to “none” in ggkmrisktable
added km_median_table_y_multiplier for better control on where to put the table on y
added km_linewidth argument
fixed issue with the new ggplot2 geom_violin quantile syntax

ggquickeda 0.3.2

added to possible positions on where to put the N of observations in Mean and Median tabs: (fixed, mean, median)
added check box to use geom_path: Check box for lines: Respect data order? (requested by Mark Sale, Certara)
small fixes in the shiny app position_beewwarm and position_quasirandom removing groupOnX
added arguments show.exptile_values, show.exptile_values_pos and show.exptile_values_order to ggkmrisktable() (requested by Mathilde Marchand, Certara)
added argument km_linewidth to control km curves linewidths (requested by Sejung Hwang, UCSF)
deprecated gglogisticexpdist() and ggcontinuousexpdist() in favor of ggresponseexpdist() with model_type =“logistic” vs “loess” vs “linear” vs “none”
several ER functions bugs were fixed e.g. when exposure_distributionand exposure_metric_split where set to “none”
several additional features to color by endpoint using fit_by_color_fill TRUE FALSE
several arguments to better control distribution y position e.g. dist_scale, dist_position_scaler , dist_offset
possibility to specify provide custom names for placebo and standard of care via exposure_metric_soc_name and exposure_metric_plac_value
possibility to specify “boxplots” for the exposure_distribution argument in ggresponseexpdist
possibility to specify “none”, “%”,“N (%)”,“N” for exposure_distribution_percent
possibility to specify “none”,“left”,“right” for exposure_distribution_Ntotal
separately control by dose and by exptile mean size mean_obs_bydose_text_size and mean_obs_byexptile_text_size
separately control where to put the N by dose or by exptile using N_byexptile_ypos or N_bydose_ypos with options “with means”,“top”,“bottom”,“none”, text size is controlled by N_text_size
added option to add N total by dose for lineranges via lineranges_Ntotal with options “none”,“left”,“right”
possibility to return the plot and a list of all datasets needed to redo all layers from scratch via return_list
give user more controls on legends when using ggresponseexpdist() with arguments: color_legend_title, fill_legend_title, linetype_legend_title, shape_legend_title, linetype_legend_title, and legend_order

ggquickeda 0.3.1

rebuilt docs fixed broken link
fixing some regressions introduced by bookmarking
fixing some errors by the new R rules for logical comparison length with | versus ||
fixing error in aspect.ratio not numeric (was also fixed in ggplot2)
fixing other regressions with GGally::ggpairs() color and group
added support of pasting values of two/three variables where it was just a placeholder
added function ggkmrisktable() to add facetable risk tables, km and by ntiles split exposures
added function gglogisticexpdist() and ggcontinuousexpdist() to add facetable logistic/linear regression with exposures split to ntiles with exposure distributions by dose/group and optional y axis projections
added link to github pages in description thanks to @olivroy
Fix part of ggplot2 3.4.0 deprecation warnings. (#27, @olivroy)

ggquickeda 0.3.0

added options to drop levels for user discrete shape and linetype scales
fixed GGally::ggpairs() group input and added ability to combine y variables
fixed issue with barplot flip applied to bivariate plots
fixed issues with barplot percent labels when position is fill
added checkboxes to parse x and y axis labels text
added ability to regenerate state of apps to have a better UX workflow in Phoenix (James Craig, #28)
removed Welcome message and added padding
James Craig added as a co-author

ggquickeda 0.2.2

fixed bug in linear model equation where slope and intercept values were switched
fixed bug where flip barplot was not working (auto flipped barplot already supported)
added group aesthetic and other enhancements for pairs plot
bug fixes for expansion, zooming with user input (plots with only x variable(s) or only y variable(s))
restored target window annotations to work with factor/character x axis
added the possibility to change the size and linetype of density plots
added the possibility to choose the shape of boxplot outlier points
added options for x and y scale tick formatting are now visible when pairs plot are active
added options for identity line and for placement of custom/target text at plot edges
added checkbox to recode numeric variables with -99 to missing
removed ggstance dependency by adding needed positions to global.r
fixed typos in Visualizing Summary Data vignette data labels

ggquickeda 0.2.1

added a new method for factor reordering min/max difference
added the mean +/- multiples of standard deviations summary using the mean_sdl function
allowed to transform the label for mean and median to 10^ (useful when the x/y axis are logged)
fixed a namespace bug with calling the scales package functions like muted or trans_xxx without the package being loaded, now using ::.
fixed a bug with updateColourInput which is now only available from the colourpicker package
reactivating the colorgradient widget after shinyjqui bug was updated and fixed
added distiller continuous Blues and brewer discrete palettes
added possibility to specify palette for viridis discrete and continuous with possibility to reverse the scale
added more support for POSIXct variables where previously they were being treated as character
automatic zoom slider is now working with POSIXct
automatic Slider or User zoom now is controllable when facets scales are free
discrete scale is no longer applied when the x and or y variable inherits from POSIXct
modifying X/Y scale expansion is now optional (fixed auto expansion with free facets)

ggquickeda 0.2.0

Added Violin plots
Added options and fixes for histograms, barplots and densities
Added options for Median/Mean/N labels (N digits, justification, edge positions.)
Added points position_quasirandom and position_beeswarm
Added multiple enhancements for theme control like panel.border, plot.tag.position and X and Y Axes Titles formatting
Added multiple enhancements and options for ggpairs
logticks and rug marks can now be on the outside of plot panel
coordinates cartesian clip can now be set to off
x/y axis percent and comma labels format now works for univariate plots
x/y zoom now works when more than one x and/or y variables are selected
long x/y discrete axes labels can now be wrapped to specified length
UI updates and auto hiding for univariate plots, pairs, km
Boxplots UI rework
Readme updated
summary level data vignette updated

ggquickeda 0.1.9

Made errorbars for Median/PI and Mean/CI ignore mapped size
fixed a bug when labels from Median/PI and Mean/CI and data are used
table1 enhancements: na.is.category, render.missing, footnote and caption.
table1 enhancements: added N missing and Sum to stats.
added second field to order and recode variables after stacking e.g. for xvars and yvars
added two new by variable factor sorting methods: ‘N Unique’ and ‘Sum’
fixed a bug when custom reorder ignored the current order as starting point
added ggplot tag field
fixed a bug when user was selecting the same variables for x and y now stacking x and y is separate.
fixed a bug in x axis label and barplots in some special cases
updated UI or barplot and Density and ability to suppress label legend
UI updates to only show the relevant options for pairs plot and histogram/barplot
Automatic color theme switching to avoid not enough color or fill errors
switched to github actions

ggquickeda 0.1.8

Added possibility to use more than one x variable(s) and or no y variable(s)
Added option for an explicit Missing Category with custom cuts
Added option to compute the inverse of Numeric variables
Moved the rounding to after division/inverse
Added possibility to round data labels before plotting
Added a blank shape type so we can do multiple y(s) when some layers do not have a point plotted.
Added Docker configuration

ggquickeda 0.1.7

Added support for semicolon separated files and added package version in App Title
Added geom_rug support for x/y and for additional variable(s)
Added geom_ribbon for mean/CI and geom_errorbar for median/PI (with UI updates)
Enable dodge for mean/CI and median/PI to take into account the specified width
Updated UI for facets options and added controls for bold, angle and justification
Allowing specifying multi_line=TRUE for all facet labellers
Added theme options for strip.switch.pad.grid and strip.switch.pad.wrap
Added possibility to completely remove the facet strips background and outline
Updated UI for legends options and added controls for legend/legend box, justification and margins
Added control for legend.spacing.y
Added continuous x/y scale(s) asymmetrical expansion values
Added more position adjustments for points (e.g. dodge)
Minor enhancements for correlation coefficients
Updated UI for theme options
Added support for the break.time.by argument for risk table, enhanced the K-M UI and added inputs for conf.type and conf.lower
Fixed code generation issues by adding dependencies
Bumped the minimum R version to 3.6.0 and the minimum ggplot version to 3.3.1
Refreshed vignettes and readme screenshots

ggquickeda 0.1.6

withheld gradientInput addition (shinyjqui issue)
fixed a bug in risktable when nothing was selected
added controls for plot margins
added controls for legend margins
strip.position for facet_wrap and more labeller options
added parsed x and y axis titles
custom position for legends and specification of legend and items background fill
updated intro vignette

ggquickeda 0.1.5

let ggpairs plots reflect custom color scales
update the emax smoother to add e0
apply a fix for the weight aesthetic for emax smoother
update code to be compatible with breaking change from tidyr 1.0
user defined shape and linetype scales
user defined custom labels for custom x and y axes ticks
user can divide by a constant not just a column

ggquickeda 0.1.4

custom labels with text, label, text_repel and label_repel
user can now add more custom colors up to 20
added user control to specify mid color of continuous color scales
added user control to specify strip text colour and more colourpicker background color
order stacked data by sd of value
added smooth emax model via nls and parameter values
added parameter values for lm fit and made text size adjustable
viridis and custom continuous color scale
added possibility to divide multiple columns by a specified one (e.g. dose normalization)
“Treat as Categories:” now accepts character variables in addition to numeric.
“Treat as Numeric:” added to enable converting columns read as factors.
updated the docs for geom and stat_km() stat_kmband() stat_kmticks().

ggquickeda 0.1.3

UI and options improvements for KM (line sizes, transparency, ignore group and color), linetype mappping
changed default error in stat_kmbands(), borrowed stairstepn from ggalt and applying zoo::na.locf() to deal with NA.
added the possibility to add median survival with or without CI
Using ggpubr::stat_cor() to compute correlations for more flexibility and margin in facets
added ability to ignore grouping and or ignore color mapping for correlation coefficient
added possibility to dodge means and medians
added possibility to specify means and medians N and Values transparency and a default seed for text_repel
geom text,label, with repel variants and position dodge for median and mean labels
added transparency control for densities and histograms as well as linetype mappping
added binwidth control for histogram (user defined or auto), and position dodge
added window adjustment control for densities
linetypes for predefined quantiles
added the possibility to add one more therapeutic window and fixed a bug with categorical x axis
added possibility to remove x/y axis tick labels
fixes for continuous scales logic
Added initial support for GGally::ggpairs()

ggquickeda 0.1.2

bug fixed where in some cases plot data did not apply filtering
updated and expanded merge multiple levels of a factor
added mappings by shape for points and linetypes of lines and associated custom legends and possibility to ignore it
added the possibility of choosing more linetypes for lines
various UI improvements for points, lines, qr, smooth, median and mean
added options to control size and transparency of qr, smooth, median and mean lines and added predefined qr 25 and 75%
added options to force mean and median shapes
fixed bug in median line not honoring transparency when Medianselected with some UI tweaks
added more options for boxplot outliers (size and transparency)
separate color control for major and minor gridlines with the possibility to remove them
added annotation_logticks()
make faceting less prone to fail when user mistakenly choose the same variable in rows and columns
make user defined color/fill scales

ggquickeda 0.1.1

added options to control facets strip background fill and placement
added options to control panel spacing
reworked barplots to be able to sort by frequency or reverse frequency
histograms and densities gain more options and flexibility
added possibility to reorder factors by length of of another variable
added possibility to keep last row by id
added more options to label x and y axes ticks e.g. using prettyNum()
added styling options for horizontal and vertical reference lines
added more methods for the correlation coefficient
added p-values for slope(s) and adjusted Rsquare when a linear regression smoother is selected
fixed a bug where x and or y axis zoom would not work in some situations
added more stats from table1 as well as possibility to cut by quantiles eqcut()
added possibility to merge multiple levels of a factor
fixed bug where commas in label names broke up the factor levels when using “Recode/Reorder Categories”

ggquickeda 0.1.0

Initial CRAN release

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