Welcome to ClientVPS Mirrors

Prepare Forest Data with Helper Functions

Prepare Forest Data with Helper Functions

library(ggforestplotR)
library(ggplot2)

This short article covers the two helper functions that prepare data before the plot is drawn.

Use as_forest_data() to standardize a coefficient table

as_forest_data() converts your column names into the internal structure used by ggforestplotR. The result contains the columns expected by ggforestplot(), add_forest_table(), and add_split_table().

raw_coefs <- data.frame(
  variable = c("Age", "BMI", "Treatment"),
  beta = c(0.10, -0.08, 0.34),
  lower = c(0.02, -0.16, 0.12),
  upper = c(0.18, 0.00, 0.56),
  display = c("Age", "BMI", "Treatment"),
  section = c("Clinical", "Clinical", "Treatment"),
  sample_size = c(120, 115, 98),
  p_value = c(0.04, 0.15, 0.001)
)

forest_ready <- as_forest_data(
  data = raw_coefs,
  term = "variable",
  estimate = "beta",
  conf.low = "lower",
  conf.high = "upper",
  label = "display",
  grouping = "section",
  n = "sample_size",
  p.value = "p_value"
)

Once the data are standardized, you can pass them straight into ggforestplot().

ggforestplot(forest_ready)

Use tidy_forest_model() for model objects

If broom is available, tidy_forest_model() can pull coefficient estimates and confidence limits from a fitted model.

fit <- lm(mpg ~ wt + hp + qsec, data = mtcars)

model_ready <- tidy_forest_model(fit)

The returned object can be passed directly into ggforestplot().

ggforestplot(model_ready)

Need a high-speed mirror for your open-source project?
Contact our mirror admin team at info@clientvps.com.

This archive is provided as a free public service to the community.
Proudly supported by infrastructure from VPSPulse , RxServers , BuyNumber , UnitVPS , OffshoreName and secure payment technology by ArionPay.