gemma2 0.1.3

Major changes

• None

Minor changes

• added cran-comments.md to .Rbuildignore per CRAN requirements.

gemma2 0.1.2

Major changes

• None

Minor changes

• resumed using package Matrix.

gemma2 0.1.1

Major changes

• None

Minor changes

• Fixed quotation marks per CRAN request

gemma2 0.1.0

Major changes

• added examples to all exported functions
• added @return Roxygen2 field to all exported functions

Minor changes

• switched to exporting only those functions that require exporting (instead of all functions)

gemma2 0.0.2

Major changes

• None

Minor changes

• New version number for CRAN submission

gemma2 0.0.1.1

• added an input parameter, verbose_output, to MphEM function. The default value is verbose_output = FALSE, which affects the output by returning only the last iteration’s parameter values. In fact, it does more than that by actually overwriting each iteration’s parameter values with the subsequent iteration’s values. To recover the ‘old’ behavior, use verbose_output = TRUE. I also added new tests to ensure that the value of the verbose_output argument doesn’t affect the last iteration’s values. These tests are in tests/testthat/test_MphEM.R.

gemma2 0.0.1

• added vignette for comparing mvlmm gemma2 results with those of Zhou’s C++ GEMMA code (v 0.96)

gemma2 0.0.0.9000

• Added a NEWS.md file to track changes to the package.