vignette("other_functions", package = "funrar")Matrix package for their next
versiongoodpracticedistinctiveness_*() functions as they can perfectly work
with absolute abundances giving the same results.tidytext for upcoming version (#42, thanks
@juliasilge
!)distinctiveness_global() to compute
occurrence based distinctiveness at the global/regional level using only
a distance matrixdata.frame() now with explicit
stringAsFactors values for compatibility with R 4.0.0rarity_dimensions()
for compatibility with R 4.0.0_tidy() aliases for each _stack()
function for easier reading (fix #29).distinctiveness_stack() returns NA as
distinctiveness values for absent species (#30).distinctiveness_range().distinctiveness_alt().NaN in
distinctiveness_stack() (#30).distinctiveness_dimensions()
that generated errors on cran server.stack_to_matrix(x, sparse = TRUE) (#25);comput_dist_matrix(), as it defaults to Gower’s
distance (#27);rarity_dimensions() in two more explicit
functions: uniqueness_dimensions() and
distinctiveness_dimensions() split corresponding
tests;combination_trait_dist());distinctiveness() now fully conserve the dimnames of
the provided site-species matrix.rarity_dimensions();rarity_dimensions() now comprises both Uniqueness and
Distinctiveness;StatMatch, microbenchmark
& reshape2 from suggested packages.make_absolute() defunct because it was based on
false assumptions and would not give back matrices of relative
abundances;make_relative(),
uniqueness(), distinctiveness() to compute
across single communities or regional pools;rarity_dimensions() function to measure the
different facets of rarity according to the trait;center and scale arguments in
compute_dist_matrix() to scale traits before computing
distance, these arguments are sensitive to the specific distance metric
used;roxygen2 to generates
documentation.matrix_to_stack() (#19),goodpractice
to enforce better code style,is_relative() function to test if matrix contains
relative abundances, scarcity() and
distinctiveness() now warns if it is not the case
(#21),microbenchmark
following CRAN advice.make_relative() and reverse function
make_absolute(),NEWS.md file to track changes to the
package.
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