facilityepimath: Analyze Mathematical Models of Healthcare Facility Transmission
Calculate useful quantities for a user-defined differential equation model of infectious disease transmission among individuals in a healthcare facility. Input rates of transition between states of individuals with and without the disease-causing organism, distributions of states at facility admission, relative infectivity of transmissible states, and the facility length of stay distribution. Calculate the model equilibrium and the basic facility reproduction number, as described in Toth et al. (2025) <doi:10.1371/journal.pcbi.1013577>.
| Version: | 0.2.1 |
| Imports: | MASS |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-11-07 |
| DOI: | 10.32614/CRAN.package.facilityepimath |
| Author: | Damon Toth  [aut,
cre, cph],
Centers for Disease Control and Prevention [fnd] (Modeling Infectious
Diseases in Healthcare Network award number U01CK000585 and Insight
Net award number CDC-RFA-FT-23-0069) |
| Maintainer: | Damon Toth <damon.toth at hsc.utah.edu> |
| BugReports: | https://github.com/EpiForeSITE/facilityepimath/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/EpiForeSITE/facilityepimath |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | facilityepimath results |
Documentation:
| Reference manual: | facilityepimath.html , facilityepimath.pdf |
| Vignettes: |
facility-R0-and-equilibrium (source, R code) |
Downloads:
| Package source: | facilityepimath_0.2.1.tar.gz |
| Windows binaries: | r-devel: facilityepimath_0.2.1.zip, r-release: facilityepimath_0.2.1.zip, r-oldrel: facilityepimath_0.2.1.zip |
| macOS binaries: | r-release (arm64): facilityepimath_0.2.1.tgz, r-oldrel (arm64): facilityepimath_0.2.1.tgz, r-release (x86_64): facilityepimath_0.2.1.tgz, r-oldrel (x86_64): facilityepimath_0.2.1.tgz |
| Old sources: | facilityepimath archive |
Linking:
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