diversitree: Comparative 'Phylogenetic' Analyses of Diversification

Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.

Version:	0.10-1
Depends:	R (≥ 2.10), methods, ape
Imports:	deSolve (≥ 1.7), graphics, grDevices, stats, subplex, Rcpp (≥ 0.10.0)
LinkingTo:	Rcpp
Suggests:	numDeriv, minqa, lubridate, expm, caper, geiger
Published:	2024-10-02
DOI:	10.32614/CRAN.package.diversitree
Author:	Richard G. FitzJohn [aut, cre], Emma Goldberg [aut], Karen Magnuson-Ford [aut], Roger Sidje [aut]
Maintainer:	Richard G. FitzJohn <rich.fitzjohn at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://www.zoology.ubc.ca/prog/diversitree/
NeedsCompilation:	yes
SystemRequirements:	fftw3 (>= 3.1.2), gsl (>= 1.15)
Citation:	diversitree citation info
Materials:	README, ChangeLog
In views:	Phylogenetics
CRAN checks:	diversitree results

Documentation:

Reference manual:

diversitree.html , diversitree.pdf

Downloads:

Package source:	diversitree_0.10-1.tar.gz
Windows binaries:	r-devel: diversitree_0.10-1.zip, r-release: diversitree_0.10-1.zip, r-oldrel: diversitree_0.10-1.zip
macOS binaries:	r-release (arm64): diversitree_0.10-1.tgz, r-oldrel (arm64): diversitree_0.10-1.tgz, r-release (x86_64): diversitree_0.10-1.tgz, r-oldrel (x86_64): diversitree_0.10-1.tgz
Old sources:	diversitree archive

Reverse dependencies:

Reverse imports:	evolved, HCTDesign, hisse, poweRbal
Reverse suggests:	DAISIEprep, fishtree, secsse

Linking:

Please use the canonical form https://CRAN.R-project.org/package=diversitree to link to this page.