detectRUNS: Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes

Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et al (2015) <doi:10.1111/age.12259>).

Version:	0.9.6
Depends:	R (≥ 3.0.0)
Imports:	plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table
LinkingTo:	Rcpp
Suggests:	testthat, knitr, rmarkdown, prettydoc
Published:	2019-10-24
DOI:	10.32614/CRAN.package.detectRUNS
Author:	Filippo Biscarini [aut, cre], Paolo Cozzi [aut], Giustino Gaspa [aut], Gabriele Marras [aut]
Maintainer:	Filippo Biscarini <filippo.biscarini at gmail.com>
BugReports:	https://github.com/bioinformatics-ptp/detectRUNS/issues
License:	GPL-3
URL:	https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS
NeedsCompilation:	yes
Materials:	README, NEWS
CRAN checks:	detectRUNS results

Documentation:

Reference manual:	detectRUNS.html , detectRUNS.pdf
Vignettes:	detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes (source, R code)

Downloads:

Package source:	detectRUNS_0.9.6.tar.gz
Windows binaries:	r-devel: detectRUNS_0.9.6.zip, r-release: detectRUNS_0.9.6.zip, r-oldrel: detectRUNS_0.9.6.zip
macOS binaries:	r-release (arm64): detectRUNS_0.9.6.tgz, r-oldrel (arm64): detectRUNS_0.9.6.tgz, r-release (x86_64): detectRUNS_0.9.6.tgz, r-oldrel (x86_64): detectRUNS_0.9.6.tgz
Old sources:	detectRUNS archive

Reverse dependencies:

Reverse suggests:

tidypopgen

Linking:

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