Multi-sample algorithm based on contigs and coverage values, to infer the relative distances of contigs from the replication origin and to accurately compare bacterial growth rates between samples. Yuan Gao and Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.
| Version: | 2.0.0 |
| Depends: | R (≥ 2.10) |
| Imports: | lme4, Matrix (≥ 1.6-2), reshape2 |
| Suggests: | covr, lintr, testthat (≥ 3.0.0) |
| Published: | 2024-01-22 |
| Author: | Yuan Gao [aut, cph], Charlie Bushman [cre] |
| Maintainer: | Charlie Bushman <ctbushman at gmail.com> |
| BugReports: | https://github.com/Ulthran/DEMIC/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/Ulthran/DEMIC |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | demic results |
| Reference manual: | demic.pdf |
| Package source: | demic_2.0.0.tar.gz |
| Windows binaries: | r-devel: demic_2.0.0.zip, r-release: demic_2.0.0.zip, r-oldrel: demic_2.0.0.zip |
| macOS binaries: | r-release (arm64): demic_2.0.0.tgz, r-oldrel (arm64): demic_2.0.0.tgz, r-release (x86_64): demic_2.0.0.tgz, r-oldrel (x86_64): demic_2.0.0.tgz |
| Old sources: | demic archive |
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