Parses drug and gene databases from their downloaded files: the 'DrugBank' XML database <https://go.drugbank.com/>, the 'OnSIDES' and 'TWOSIDES' adverse drug event databases, Human Phenotype Ontology ('HPO') gene-phenotype associations, the 'HGNC' gene nomenclature files, Health Canada's Drug Product Database ('DPD') data extract, and the 'openFDA' 'Drugs@FDA' and 'NDC' directory downloads. The parsed tables are returned in an 'R' object called 'dvobject', which records the source release, licence and file hashes.
| Version: | 2.3.0 |
| Depends: | R (≥ 3.5) |
| Imports: | data.table, dplyr, jsonlite, progress, purrr, tibble, tools, utils, XML |
| Suggests: | canvasXpress, knitr, rmarkdown, testthat, tidyr |
| Published: | 2026-11-08 |
| DOI: | 10.32614/CRAN.package.dbparser |
| Author: | Mohammed Ali [aut, cre], Ali Ezzat [aut], Hao Zhu [rev], Emma Mendelsohn [rev], Interstellar [cph, fnd] (Interstellar for Consultation Services, URL: https://interstellar-egypt.com) |
| Maintainer: | Mohammed Ali <mohammed.ali at interstellar-egypt.com> |
| BugReports: | https://github.com/ropensci/dbparser/issues |
| License: | MIT + file LICENSE |
| URL: | https://docs.ropensci.org/dbparser/, https://github.com/ropensci/dbparser, https://interstellar-egypt.com |
| NeedsCompilation: | no |
| Citation: | dbparser citation info |
| Materials: | README, NEWS |
| In views: | Epidemiology |
| CRAN checks: | dbparser results |
| Reference manual: | dbparser.html , dbparser.pdf |
| Vignettes: |
Drug Mechanism Profiling with CETT Actions (source, R code) Introducing dbparser 2.2.0 (source) Getting started with dbparser (source, R code) |
| Package source: | dbparser_2.3.0.tar.gz |
| Windows binaries: | r-devel: dbparser_2.2.1.zip, r-release: dbparser_2.2.1.zip, r-oldrel: dbparser_2.2.1.zip |
| macOS binaries: | r-release (arm64): dbparser_2.2.1.tgz, r-oldrel (arm64): dbparser_2.2.1.tgz, r-release (x86_64): dbparser_2.2.1.tgz, r-oldrel (x86_64): dbparser_2.2.1.tgz |
| Old sources: | dbparser archive |
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