cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)
A data package with 2 main package variables: 'signature' and 'etiology'. The 'signature' variable contains the latest mutational signature profiles released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 3 mutation types: * Single base substitutions in the context of preceding and following bases, * Doublet base substitutions, and * Small insertions and deletions. The 'etiology' variable provides the known or hypothesized causes of signatures. 'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more information.
| Version: | 1.1.1 |
| Depends: | R (≥ 3.5) |
| Suggests: | testthat (≥ 3.0.0), ICAMS, usethis |
| Published: | 2023-08-30 |
| DOI: | 10.32614/CRAN.package.cosmicsig |
| Author: | Steven Rozen 
[aut, cre],
Nanhai Jiang
[aut] |
| Maintainer: | Steven Rozen <steverozen at pm.me> |
| BugReports: | https://github.com/Rozen-Lab/cosmicsig/issues |
| License: | GPL-3 |
| URL: | https://github.com/Rozen-Lab/cosmicsig |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | cosmicsig citation info |
| Materials: | README, NEWS |
| CRAN checks: | cosmicsig results |
Documentation:
| Reference manual: | cosmicsig.html , cosmicsig.pdf |
Downloads:
| Package source: | cosmicsig_1.1.1.tar.gz |
| Windows binaries: | r-devel: cosmicsig_1.1.1.zip, r-release: cosmicsig_1.1.1.zip, r-oldrel: cosmicsig_1.1.1.zip |
| macOS binaries: | r-release (arm64): cosmicsig_1.1.1.tgz, r-oldrel (arm64): cosmicsig_1.1.1.tgz, r-release (x86_64): cosmicsig_1.1.1.tgz, r-oldrel (x86_64): cosmicsig_1.1.1.tgz |
| Old sources: | cosmicsig archive |
Reverse dependencies:
| Reverse suggests: | mSigTools |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=cosmicsig to link to this page.