corHMM: Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

Version:	2.8
Depends:	ape, nloptr, GenSA
Imports:	expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools
Suggests:	testthat, knitr, rmarkdown
Published:	2022-06-13
DOI:	10.32614/CRAN.package.corHMM
Author:	Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut]
Maintainer:	Jeremy Beaulieu <jmbeauli at uark.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	no
In views:	Phylogenetics
CRAN checks:	corHMM results

Documentation:

Reference manual:	corHMM.html , corHMM.pdf
Vignettes:	Generalized corHMM (source, R code)

Downloads:

Package source:	corHMM_2.8.tar.gz
Windows binaries:	r-devel: corHMM_2.8.zip, r-release: corHMM_2.8.zip, r-oldrel: corHMM_2.8.zip
macOS binaries:	r-release (arm64): corHMM_2.8.tgz, r-oldrel (arm64): corHMM_2.8.tgz, r-release (x86_64): corHMM_2.8.tgz, r-oldrel (x86_64): corHMM_2.8.tgz
Old sources:	corHMM archive

Reverse dependencies:

Reverse imports:	hisse
Reverse suggests:	DAISIEprep

Linking:

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