coda4microbiome: Compositional Data Analysis for Microbiome Studies
Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.
| Version: | 0.2.4 |
| Depends: | R (≥ 3.5.0) |
| Imports: | corrplot, glmnet, plyr, pROC, ggpubr, ggplot2, ComplexHeatmap, circlize, survival, survminer |
| Suggests: | rmarkdown |
| Published: | 2024-07-17 |
| DOI: | 10.32614/CRAN.package.coda4microbiome |
| Author: | Malu Calle  [aut],
Toni Susin [aut,
cre],
Meritxell Pujolassos
[aut] |
| Maintainer: | Toni Susin <toni.susin at upc.edu> |
| BugReports: | https://github.com/malucalle/coda4microbiome/issues |
| License: | MIT + file LICENSE |
| URL: | https://malucalle.github.io/coda4microbiome/ |
| NeedsCompilation: | no |
| In views: | CompositionalData |
| CRAN checks: | coda4microbiome results |
Documentation:
| Reference manual: | coda4microbiome.html , coda4microbiome.pdf |
Downloads:
| Package source: | coda4microbiome_0.2.4.tar.gz |
| Windows binaries: | r-devel: coda4microbiome_0.2.4.zip, r-release: coda4microbiome_0.2.4.zip, r-oldrel: coda4microbiome_0.2.4.zip |
| macOS binaries: | r-release (arm64): coda4microbiome_0.2.4.tgz, r-oldrel (arm64): coda4microbiome_0.2.4.tgz, r-release (x86_64): coda4microbiome_0.2.4.tgz, r-oldrel (x86_64): coda4microbiome_0.2.4.tgz |
| Old sources: | coda4microbiome archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=coda4microbiome to link to this page.