coarseDataTools: Analysis of Coarsely Observed Data

Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package. See Reich et al. (2009) <doi:10.1002/sim.3659>, Reich et al. (2012) <doi:10.1111/j.1541-0420.2011.01709.x>, and Lessler et al. (2009) <doi:10.1016/S1473-3099(09)70069-6>.

Version:	0.7.2
Depends:	R (≥ 3.5.0)
Imports:	MCMCpack, graphics, stats, methods
Suggests:	markdown, knitr
Published:	2025-04-11
DOI:	10.32614/CRAN.package.coarseDataTools
Author:	Nicholas G. Reich [aut, cre], Justin Lessler [aut], Andrew Azman [aut], Zhian N. Kamvar [ctb], Hugo Gruson [ctb]
Maintainer:	Nicholas G. Reich <nick at umass.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	http://nickreich.github.io/coarseDataTools/
NeedsCompilation:	no
Citation:	coarseDataTools citation info
Materials:	README, NEWS, ChangeLog
In views:	Epidemiology, Survival
CRAN checks:	coarseDataTools results

Documentation:

Reference manual:	coarseDataTools.html , coarseDataTools.pdf
Vignettes:	Example for estimating the case fatality ratio (source, R code)

Downloads:

Package source:	coarseDataTools_0.7.2.tar.gz
Windows binaries:	r-devel: coarseDataTools_0.7.2.zip, r-release: coarseDataTools_0.7.2.zip, r-oldrel: coarseDataTools_0.7.2.zip
macOS binaries:	r-release (arm64): coarseDataTools_0.7.2.tgz, r-oldrel (arm64): coarseDataTools_0.7.2.tgz, r-release (x86_64): coarseDataTools_0.7.2.tgz, r-oldrel (x86_64): coarseDataTools_0.7.2.tgz
Old sources:	coarseDataTools archive

Reverse dependencies:

Reverse imports:

EpiEstim

Linking:

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