Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) <doi:10.1201/9780429466700>. For details on the MCMC algorithm, see Kuhner et al. (1995) <doi:10.1093/genetics/140.4.1421> and Drummond et al. (2002) <doi:10.1093/genetics/161.3.1307>.
| Version: | 0.4-4 |
| Depends: | ape, coda, lattice |
| Imports: | Matrix, phangorn, splines, stats, utils |
| Published: | 2022-04-22 |
| DOI: | 10.32614/CRAN.package.coalescentMCMC |
| Author: | Emmanuel Paradis [aut, cre, cph] |
| Maintainer: | Emmanuel Paradis <Emmanuel.Paradis at ird.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | coalescentMCMC citation info |
| Materials: | NEWS |
| In views: | Bayesian |
| CRAN checks: | coalescentMCMC results |
| Reference manual: | coalescentMCMC.html , coalescentMCMC.pdf |
| Vignettes: |
Coalescent Models (source, R code) Running coalescentMCMC (source, R code) |
| Package source: | coalescentMCMC_0.4-4.tar.gz |
| Windows binaries: | r-devel: coalescentMCMC_0.4-4.zip, r-release: coalescentMCMC_0.4-4.zip, r-oldrel: coalescentMCMC_0.4-4.zip |
| macOS binaries: | r-release (arm64): coalescentMCMC_0.4-4.tgz, r-oldrel (arm64): coalescentMCMC_0.4-4.tgz, r-release (x86_64): coalescentMCMC_0.4-4.tgz, r-oldrel (x86_64): coalescentMCMC_0.4-4.tgz |
| Old sources: | coalescentMCMC archive |
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