celliverse: An Ecosystem for Exploring the Universe of Single-Cell Data
Contains functions for single-cell RNA sequencing data analysis. It provides core functionalities for clustering cells, identifying markers for predefined clusters, performing sub-clustering of major cell populations, and discovering markers within custom-selected subsets of cells. 'CelliVerse' also includes methods for analyzing cluster similarity and generating intuitive visualizations. Designed to be independent of library size and other sample- or cell-level confounding effects, 'CelliVerse' ensures reliable and interpretable results across a wide range of datasets.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The 'igraph' software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
| Version: |
0.0.2 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
Matrix, Seurat, SummarizedExperiment, scales, ggplot2, magrittr, igraph, cli, dplyr, data.table, stringr, tidyr, RColorBrewer, ggnewscale, patchwork, tidyselect, methods, Rcpp |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
R.rsp, htmltools, knitr, rmarkdown, plumber, jsonlite, httr2, processx, later, promises, callr, httpuv, openssl, fs, svglite, zip, withr, SeuratObject, ComplexHeatmap, hdf5r, rstudioapi |
| Published: |
2026-09-12 |
| DOI: |
10.32614/CRAN.package.celliverse (may not be active yet) |
| Author: |
Adrian Salavaty 
[aut, cre] |
| Maintainer: |
Adrian Salavaty <abbas.salavaty at gmail.com> |
| BugReports: |
https://github.com/asalavaty/celliverse/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/asalavaty/celliverse,
https://asalavaty.github.io/celliverse/ |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Citation: |
celliverse citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
celliverse results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=celliverse
to link to this page.