News

cellGeometry 0.5.7

11/12/2025

• Change log argument in deconvolute() to logged_bulk. NB. this is a change of logic.

cellGeometry 0.5.6

07/10/2025

• Add residuals.deconv() to allow recalculation of full residuals matrix.

cellGeometry 0.5.5

10/09/2025

• Fix bug in mergeMarkers() if cellMarkers object has no cell grouping vector.

cellGeometry 0.5.4

09/09/2025

• Fix CRAN checks
• Switch from using cat() to message()

cellGeometry 0.5.3

26/08/2025

• Massive speed up (4-5x) in compensation optimisation

cellGeometry 0.5.2

30/07/2025

• Expanded to 3 methods for identifying outlier genes (var.e, Cook’s distance, Studentized residuals)
• Improved (nested) parallelisation of tune_deconv()
• Rewrite weights code (faster)

cellGeometry 0.5.0

14/07/2025

• Calculation of SE
• Detection and multipass removal of problematic genes with extreme residuals

cellGeometry 0.2.0

24/01/2025

• This is the initial build of cellGeometry