branchingprocess: Calculate Outbreak Probabilities for a Branching Process Model
Quantify outbreak risk posed by individual importers of a transmissible pathogen. Input parameters of negative binomial offspring distributions for the number of transmissions from each infected individual and initial number of infected. Calculate probabilities of final outbreak size and generations of transmission, as described in Toth et al. (2015) <doi:10.3201/eid2108.150170> and Toth et al. (2016) <doi:10.1016/j.epidem.2016.04.002>.
| Version: | 0.1.0 |
| Imports: | stats |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-04-25 |
| DOI: | 10.32614/CRAN.package.branchingprocess |
| Author: | Damon Toth  [aut,
cre],
Erin Clancey
[ctb],
Centers for Disease Control and Prevention's Center for Forecasting and
Outbreak Analytics [fnd] (Cooperative agreement CDC-RFA-FT-23-0069) |
| Maintainer: | Damon Toth <damon.toth at hsc.utah.edu> |
| BugReports: | https://github.com/EpiForeSITE/branchingprocess/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/EpiForeSITE/branchingprocess, https://epiforesite.github.io/branchingprocess/ |
| NeedsCompilation: | no |
| Citation: | branchingprocess citation info |
| Materials: | README, NEWS |
| CRAN checks: | branchingprocess results |
Documentation:
| Reference manual: | branchingprocess.html , branchingprocess.pdf |
| Vignettes: |
H5N1 Example (source, R code) |
Downloads:
| Package source: | branchingprocess_0.1.0.tar.gz |
| Windows binaries: | r-devel: branchingprocess_0.1.0.zip, r-release: branchingprocess_0.1.0.zip, r-oldrel: branchingprocess_0.1.0.zip |
| macOS binaries: | r-release (arm64): branchingprocess_0.1.0.tgz, r-oldrel (arm64): branchingprocess_0.1.0.tgz, r-release (x86_64): branchingprocess_0.1.0.tgz, r-oldrel (x86_64): branchingprocess_0.1.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=branchingprocess to link to this page.