bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.

Version:	1.1.5
Depends:	R (≥ 3.0)
Imports:	testthat (≥ 3.0.0), VennDiagram (≥ 1.6.4), data.table (≥ 1.8.11), R.utils (≥ 2.0.2), yaml (≥ 2.1.10), parallel, grid
Suggests:	knitr (≥ 1.4), rmarkdown (≥ 0.9.5)
Published:	2026-01-24
DOI:	10.32614/CRAN.package.bedr
Author:	Syed Haider [aut], Daryl Waggott [aut], Emilie Lalonde [ctb], Clement Fung [ctb], Helena Winata [ctb], Dan Knight [ctb], Michael Chirico [ctb], Melinda Luo [ctb], Paul C. Boutros [aut, cre, cph]
Maintainer:	Paul C. Boutros <pboutros at sbpdiscovery.org>
BugReports:	https://github.com/theboutroslab/package-bedr/issues
License:	GPL-2
URL:	https://github.com/theboutroslab/package-bedr
NeedsCompilation:	no
SystemRequirements:	Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix (>= 1.3)'.
Materials:	NEWS
CRAN checks:	bedr results

Documentation:

Reference manual:	bedr.html , bedr.pdf
Vignettes:	bedr (source, R code)

Downloads:

Package source:	bedr_1.1.5.tar.gz
Windows binaries:	r-devel: bedr_1.1.5.zip, r-release: bedr_1.1.5.zip, r-oldrel: bedr_1.1.5.zip
macOS binaries:	r-release (arm64): bedr_1.1.5.tgz, r-oldrel (arm64): bedr_1.1.5.tgz, r-release (x86_64): bedr_1.1.5.tgz, r-oldrel (x86_64): bedr_1.1.5.tgz
Old sources:	bedr archive

Reverse dependencies:

Reverse imports:

chicane, Ravages

Linking:

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