bayou: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Fits and simulates multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using Bayesian reversible-jump methods. See Uyeda and Harmon (2014) <doi:10.1093/sysbio/syu057>.
| Version: | 2.3.2 |
| Depends: | ape (≥ 3.0-6), coda, geiger (≥ 2.0), phytools, R (≥ 2.15.0) |
| Imports: | assertthat, denstrip, fitdistrplus, foreach, graphics, grDevices, MASS, Matrix, mnormt, Rcpp (≥ 0.10.3), stats |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | doParallel, testthat |
| Published: | 2026-02-13 |
| DOI: | 10.32614/CRAN.package.bayou |
| Author: | Josef C. Uyeda 
[aut, cre],
Jon Eastman [ctb],
Luke Harmon [ctb],
Abhishek Hari [ctb] |
| Maintainer: | Josef C. Uyeda <juyeda at vt.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | bayou results |
Documentation:
| Reference manual: | bayou.html , bayou.pdf |
Downloads:
| Package source: | bayou_2.3.2.tar.gz |
| Windows binaries: | r-devel: bayou_2.3.2.zip, r-release: bayou_2.3.2.zip, r-oldrel: bayou_2.3.2.zip |
| macOS binaries: | r-release (arm64): bayou_2.3.2.tgz, r-oldrel (arm64): bayou_2.3.2.tgz, r-release (x86_64): bayou_2.3.2.tgz, r-oldrel (x86_64): bayou_2.3.2.tgz |
| Old sources: | bayou archive |
Linking:
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