Generates phylogenetic trees and distance matrices from a list of taxon names, or from a higher taxon expanded down to a chosen lower rank. Trees are obtained as induced subtrees of the Open Tree of Life synthetic tree using the 'rotl' package (Michonneau, Brown and Winter, 2016, <doi:10.1111/2041-210X.12593>). Expansion of a higher taxon to its descendants uses 'taxize' (Chamberlain and Szocs, 2013, <doi:10.12688/f1000research.2-191.v2>).
| Version: | 0.4.0 |
| Imports: | ape, rotl, taxize, stats |
| Suggests: | fishtree, rgbif, geosphere, testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: | 2026-07-19 |
| DOI: | 10.32614/CRAN.package.aptg |
| Author: | Christophe Benjamin [aut, cre] |
| Maintainer: | Christophe Benjamin <christophe.benjamin at protonmail.com> |
| BugReports: | https://github.com/christophebenjamin/aptg/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/christophebenjamin/aptg |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | aptg results |
| Reference manual: | aptg.html , aptg.pdf |
| Vignettes: |
Building phylogenetic trees with aptg (source, R code) |
| Package source: | aptg_0.4.0.tar.gz |
| Windows binaries: | r-devel: aptg_0.4.0.zip, r-release: aptg_0.4.0.zip, r-oldrel: aptg_0.4.0.zip |
| macOS binaries: | r-release (arm64): aptg_0.4.0.tgz, r-oldrel (arm64): aptg_0.4.0.tgz, r-release (x86_64): aptg_0.4.0.tgz, r-oldrel (x86_64): aptg_0.4.0.tgz |
| Old sources: | aptg archive |
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