allofus: Interface for 'All of Us' Researcher Workbench
Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.
| Version: | 1.2.0 |
| Depends: | R (≥ 2.10) |
| Imports: | cli, tidyr, magrittr, dplyr (≥ 1.1.4), glue, bigrquery (≥ 1.5.1), purrr, stats, utils, dbplyr (≥ 2.5.0), sessioninfo, rlang, stringr, DBI, lifecycle, bit64 |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), kableExtra, DT, googlesheets4, tibble, forcats, gh, SqlRender (≥ 1.6.0) |
| Published: | 2024-11-06 |
| DOI: | 10.32614/CRAN.package.allofus |
| Author: | Louisa Smith 
[aut, cph],
Rob Cavanaugh
[aut, cre, cph] |
| Maintainer: | Rob Cavanaugh <r.cavanaugh at northeastern.edu> |
| BugReports: | https://github.com/roux-ohdsi/allofus/issues |
| License: | MIT + file LICENSE |
| URL: | https://roux-ohdsi.github.io/allofus/, https://github.com/roux-ohdsi/allofus |
| NeedsCompilation: | no |
| Citation: | allofus citation info |
| Materials: | README, NEWS |
| CRAN checks: | allofus results |
Documentation:
| Reference manual: | allofus.html , allofus.pdf |
| Vignettes: |
All of Us in R (source, R code) Using ATLAS to create a cohort (source, R code) Extracting All of Us survey and EHR data (source, R code) Managing files on the workbench (source, R code) |
Downloads:
| Package source: | allofus_1.2.0.tar.gz |
| Windows binaries: | r-devel: allofus_1.2.0.zip, r-release: allofus_1.2.0.zip, r-oldrel: allofus_1.2.0.zip |
| macOS binaries: | r-release (arm64): allofus_1.2.0.tgz, r-oldrel (arm64): allofus_1.2.0.tgz, r-release (x86_64): allofus_1.2.0.tgz, r-oldrel (x86_64): allofus_1.2.0.tgz |
| Old sources: | allofus archive |
Linking:
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