allelematch: Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present

Tools for the identification of unique of multilocus genotypes when both genotyping error and missing data may be present; targeted for use with large datasets and databases containing multiple samples of each individual (a common situation in conservation genetics, particularly in non-invasive wildlife sampling applications). Functions explicitly incorporate missing data and can tolerate allele mismatches created by genotyping error. If you use this package, please cite the original publication in Molecular Ecology Resources (Galpern et al., 2012), the details for which can be generated using citation('allelematch'). For a complete vignette, please access via the Data S1 Supplementary documentation and tutorials (PDF) located at <doi:10.1111/j.1755-0998.2012.03137.x>.

Version:	2.5.5
Depends:	dynamicTreeCut
Published:	2025-07-26
DOI:	10.32614/CRAN.package.allelematch
Author:	Paul Galpern [aut], Micheline Manseau [aut], Pete Hettinga [aut], Karen Smith [aut], Paul Wilson [aut], Todd Cross [cre]
Maintainer:	Todd Cross <todd.cross at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	<doi:10.1111%2Fj.1755-0998.2012.03137.x>
NeedsCompilation:	no
Citation:	allelematch citation info
CRAN checks:	allelematch results

Documentation:

Reference manual:

allelematch.html , allelematch.pdf

Downloads:

Package source:	allelematch_2.5.5.tar.gz
Windows binaries:	r-devel: allelematch_2.5.5.zip, r-release: allelematch_2.5.5.zip, r-oldrel: allelematch_2.5.5.zip
macOS binaries:	r-release (arm64): allelematch_2.5.5.tgz, r-oldrel (arm64): allelematch_2.5.5.tgz, r-release (x86_64): allelematch_2.5.5.tgz, r-oldrel (x86_64): allelematch_2.5.5.tgz
Old sources:	allelematch archive

Reverse dependencies:

Reverse imports:

amregtest

Linking:

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