agvgd: An R Implementation of the 'Align-GVGD' Method
'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.
| Version: | 0.1.2 |
| Depends: | R (≥ 2.10) |
| Imports: | crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs |
| Suggests: | rmarkdown, covr, testthat (≥ 3.0.0) |
| Published: | 2022-09-10 |
| DOI: | 10.32614/CRAN.package.agvgd |
| Author: | Ramiro Magno 
[aut, cre],
Isabel Duarte
[aut],
Ana-Teresa Maia
[aut],
CINTESIS [cph, fnd] |
| Maintainer: | Ramiro Magno <ramiro.magno at gmail.com> |
| BugReports: | https://github.com/maialab/agvgd/issues |
| License: | MIT + file LICENSE |
| URL: | https://maialab.org/agvgd/, https://github.com/maialab/agvgd |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | agvgd results |
Documentation:
| Reference manual: | agvgd.html , agvgd.pdf |
Downloads:
| Package source: | agvgd_0.1.2.tar.gz |
| Windows binaries: | r-devel: agvgd_0.1.2.zip, r-release: agvgd_0.1.2.zip, r-oldrel: agvgd_0.1.2.zip |
| macOS binaries: | r-release (arm64): agvgd_0.1.2.tgz, r-oldrel (arm64): agvgd_0.1.2.tgz, r-release (x86_64): agvgd_0.1.2.tgz, r-oldrel (x86_64): agvgd_0.1.2.tgz |
| Old sources: | agvgd archive |
Linking:
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