Introduction

As this is a package extension, if you are new to {admiral} then the best place to first start reading would be the Get Started page. This extension package follows the same main idea and conventions, and re-uses many functions from {admiral}, so it is important to thoroughly understand these to be able to use {admiralneuro}.

Creating Neuroscience ADaM Datasets

For the neuroscience ADaM data structures, an overview of the flow and example function calls for the most common steps are provided by the following vignette:

• Creating ADAPET/ADTPET

{admiralneuro} also provides template R scripts as a starting point. They can be created by calling use_ad_template() from {admiral}, e.g.,

library(admiral)

use_ad_template(
  adam_name = "adapet",
  save_path = "./ad_adapet.R",
  package = "admiralneuro"
)

A list of all available templates can be obtained by list_all_templates() from {admiral}:

admiral::list_all_templates(package = "admiralneuro")
#> Existing ADaM templates in package 'admiralneuro':
#> • ADAPET
#> • ADNV
#> • ADTPET

Neuroscience test SDTM datasets are provided through the {pharmaversesdtm} package. The following datasets are available: DM, NV, SUPPNV and AG.

Support

Support is provided via the admiral Slack channel. Additionally, please feel free to raise issues in our GitHub repository.