adephylo: Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.

Version:	1.1-17
Depends:	methods, ade4 (≥ 1.7-10)
Imports:	phylobase, ape, adegenet
Published:	2025-03-14
DOI:	10.32614/CRAN.package.adephylo
Author:	Stéphane Dray [aut], Thibaut Jombart [aut], Anders Ellern Bilgrau [ctb], Aurélie Siberchicot [ctb, cre]
Maintainer:	Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>
BugReports:	https://github.com/adeverse/adephylo/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/adeverse/adephylo
NeedsCompilation:	yes
Citation:	adephylo citation info
Materials:	ChangeLog
In views:	Phylogenetics
CRAN checks:	adephylo results

Documentation:

Reference manual:	adephylo.html , adephylo.pdf
Vignettes:	adephylo: exploratory analyses for the phylogenetic comparative method (source, R code)

Downloads:

Package source:	adephylo_1.1-17.tar.gz
Windows binaries:	r-devel: adephylo_1.1-17.zip, r-release: adephylo_1.1-17.zip, r-oldrel: adephylo_1.1-17.zip
macOS binaries:	r-release (arm64): adephylo_1.1-17.tgz, r-oldrel (arm64): adephylo_1.1-17.tgz, r-release (x86_64): adephylo_1.1-17.tgz, r-oldrel (x86_64): adephylo_1.1-17.tgz
Old sources:	adephylo archive

Reverse dependencies:

Reverse imports:	adespatial, phylosignal
Reverse suggests:	ade4, phylosem, treestats

Linking:

Please use the canonical form https://CRAN.R-project.org/package=adephylo to link to this page.