Tools for reporting and forecasting viral respiratory infections, using case surveillance data. Report generation tools for short-term forecasts, and validation metrics for an arbitrary number of customizable respiratory viruses. Estimation of the effective reproduction number is based on the 'EpiEstim' framework described in work by 'Cori' and colleagues. (2013) <doi:10.1093/aje/kwt133>.
| Version: | 1.0.4 |
| Depends: | R (≥ 4.1.0) |
| Imports: | data.table, dplyr, EpiEstim, ggplot2, incidence, lubridate, projections, purrr, rlang, tibble, stats, utils, tidyr, glue, mgcv, kableExtra, cowplot |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2026-02-17 |
| DOI: | 10.32614/CRAN.package.ViroReportR |
| Author: | Mike Irvine [aut, cre, cph], Caesar Wong [aut], Nirupama Tamvada [aut], Rebeca Falcao [aut], Nelson Tang [aut] |
| Maintainer: | Mike Irvine <mike.irvine at bccdc.ca> |
| BugReports: | https://github.com/BCCDC-PHSA/ViroReportR/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/BCCDC-PHSA/ViroReportR |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | ViroReportR results |
| Reference manual: | ViroReportR.html , ViroReportR.pdf |
| Vignettes: |
Model fitting and producing short-term forecasts using daily data with EpiEstim (source, R code) |
| Package source: | ViroReportR_1.0.4.tar.gz |
| Windows binaries: | r-devel: ViroReportR_1.0.4.zip, r-release: ViroReportR_1.0.4.zip, r-oldrel: ViroReportR_1.0.4.zip |
| macOS binaries: | r-release (arm64): ViroReportR_1.0.4.tgz, r-oldrel (arm64): ViroReportR_1.0.4.tgz, r-release (x86_64): ViroReportR_1.0.4.tgz, r-oldrel (x86_64): ViroReportR_1.0.4.tgz |
| Old sources: | ViroReportR archive |
Please use the canonical form https://CRAN.R-project.org/package=ViroReportR to link to this page.
Need a high-speed mirror for your open-source project?
Contact our mirror admin team at info@clientvps.com.
This archive is provided as a free public service to the community.
Proudly supported by infrastructure from VPSPulse , RxServers , BuyNumber , UnitVPS , OffshoreName and secure payment technology by ArionPay.