Provides tools for designing virus protein panels through sequence clustering and protein sequence analysis. The package includes functionality for filtering sequences, removing redundancy, identifying outliers, clustering sequences, and calculating entropy to evaluate clustering quality. A publication describing these methods is in preparation and will be added once available.
| Version: | 0.1.0 |
| Imports: | Biostrings, DECIPHER, cluster, pathviewr, dbscan, ape |
| Suggests: | optparse |
| Published: | 2025-05-02 |
| DOI: | 10.32614/CRAN.package.VIProDesign |
| Author: | Tatsiana Bylund [aut, cre] |
| Maintainer: | Tatsiana Bylund <tatsiana.bylund at nih.gov> |
| License: | Apache License 2.0 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | VIProDesign results |
| Reference manual: | VIProDesign.html , VIProDesign.pdf |
| Package source: | VIProDesign_0.1.0.tar.gz |
| Windows binaries: | r-devel: VIProDesign_0.1.0.zip, r-release: VIProDesign_0.1.0.zip, r-oldrel: VIProDesign_0.1.0.zip |
| macOS binaries: | r-release (arm64): VIProDesign_0.1.0.tgz, r-oldrel (arm64): VIProDesign_0.1.0.tgz, r-release (x86_64): VIProDesign_0.1.0.tgz, r-oldrel (x86_64): VIProDesign_0.1.0.tgz |
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