TPAC: Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.

Version:	0.2.0
Depends:	R (≥ 3.6.0)
Imports:	data.table, MASS, TPACData
Published:	2023-10-26
Author:	H. Robert Frost [aut, cre]
Maintainer:	H. Robert Frost <rob.frost at dartmouth.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	no
Materials:	NEWS
CRAN checks:	TPAC results

Documentation:

Reference manual:	TPAC.pdf
Vignettes:	TCGA liver cancer using MSigDB Hallmark collection example

Downloads:

Package source:	TPAC_0.2.0.tar.gz
Windows binaries:	r-devel: TPAC_0.2.0.zip, r-release: TPAC_0.2.0.zip, r-oldrel: TPAC_0.2.0.zip
macOS binaries:	r-release (arm64): TPAC_0.2.0.tgz, r-oldrel (arm64): TPAC_0.2.0.tgz, r-release (x86_64): TPAC_0.2.0.tgz, r-oldrel (x86_64): TPAC_0.2.0.tgz

Linking:

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