TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees
Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>.
| Version: | 1.0.3 |
| Depends: | R (≥ 3.4.0) |
| Imports: | ape, Rdpack, TreeDist, TreeTools (≥ 1.1.0) |
| LinkingTo: | BH, Rcpp |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2025-11-28 |
| DOI: | 10.32614/CRAN.package.TBRDist |
| Author: | Martin R. Smith 
[aut, cre, cph],
Chris Whidden [cph] |
| Maintainer: | Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: | https://github.com/ms609/TBRDist/issues/ |
| License: | GPL (≥ 3) |
| Copyright: | Underlying C++ code copyright 2018 Chris Whidden. |
| URL: | https://ms609.github.io/TBRDist/, https://github.com/ms609/TBRDist/, https://github.com/cwhidden/uspr/ |
| NeedsCompilation: | yes |
| Language: | en-GB |
| Citation: | TBRDist citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | TBRDist results |
Documentation:
| Reference manual: | TBRDist.html , TBRDist.pdf |
| Vignettes: |
Using TBRDist (source, R code) |
Downloads:
| Package source: | TBRDist_1.0.3.tar.gz |
| Windows binaries: | r-devel: TBRDist_1.0.3.zip, r-release: TBRDist_1.0.3.zip, r-oldrel: TBRDist_1.0.3.zip |
| macOS binaries: | r-release (arm64): TBRDist_1.0.3.tgz, r-oldrel (arm64): TBRDist_1.0.3.tgz, r-release (x86_64): TBRDist_1.0.3.tgz, r-oldrel (x86_64): TBRDist_1.0.3.tgz |
| Old sources: | TBRDist archive |
Reverse dependencies:
| Reverse suggests: | TreeDist |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=TBRDist to link to this page.