SpoMAG: Probability of Sporulation Potential in MAGs
Implements an ensemble machine learning approach to predict the sporulation potential of metagenome-assembled genomes (MAGs) from uncultivated Firmicutes based on the presence/absence of sporulation-associated genes.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, tidyr, tibble, stats |
| Suggests: | testthat (≥ 3.0.0), caret, kernlab, randomForest, readr |
| Published: | 2025-05-29 |
| DOI: | 10.32614/CRAN.package.SpoMAG |
| Author: | Douglas Terra Machado
 [aut, cre],
Otávio José Bernardes Brustolini
[ctb],
Ellen dos Santos Corrêa [ctb],
Ana Tereza Ribeiro Vasconcelos
[ctb] |
| Maintainer: | Douglas Terra Machado <dougterra at gmail.com> |
| License: | Artistic-2.0 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | SpoMAG results |
Documentation:
| Reference manual: | SpoMAG.html , SpoMAG.pdf |
Downloads:
| Package source: | SpoMAG_0.1.0.tar.gz |
| Windows binaries: | r-devel: SpoMAG_0.1.0.zip, r-release: SpoMAG_0.1.0.zip, r-oldrel: SpoMAG_0.1.0.zip |
| macOS binaries: | r-release (arm64): SpoMAG_0.1.0.tgz, r-oldrel (arm64): SpoMAG_0.1.0.tgz, r-release (x86_64): SpoMAG_0.1.0.tgz, r-oldrel (x86_64): SpoMAG_0.1.0.tgz |
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