Stress Response score (SRscore) is a stress responsiveness measure for transcriptome datasets and is based on the vote-counting method. The SRscore is determined to evaluate and score genes on the basis of the consistency of the direction of their regulation (Up-regulation, Down-regulation, or No change) under stress conditions across multiple analyzed research projects. This package is based on the HN-score (score based on the ratio of gene expression between hypoxic and normoxic conditions) proposed by Tamura and Bono (2022) <doi:10.3390/life12071079>, and can calculate both the original method and an extended calculation method described in Fukuda et al. (2025) <doi:10.1093/plphys/kiaf105>.
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, tidyr, utils, rlang |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), ggplot2, tibble, ComplexHeatmap, clusterProfiler, org.At.tair.db, BiocStyle, RColorBrewer, genefilter, DT |
| Published: | 2026-01-08 |
| DOI: | 10.32614/CRAN.package.SRscore |
| Author: | Yusuke Fukuda [aut, cre], Atsushi Fukushima [aut] |
| Maintainer: | Yusuke Fukuda <s823631038 at kpu.ac.jp> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | SRscore results |
| Reference manual: | SRscore.html , SRscore.pdf |
| Vignettes: |
SRscore (source, R code) |
| Package source: | SRscore_0.1.2.tar.gz |
| Windows binaries: | r-devel: SRscore_0.1.2.zip, r-release: SRscore_0.1.2.zip, r-oldrel: SRscore_0.1.2.zip |
| macOS binaries: | r-release (arm64): SRscore_0.1.2.tgz, r-oldrel (arm64): SRscore_0.1.2.tgz, r-release (x86_64): SRscore_0.1.2.tgz, r-oldrel (x86_64): SRscore_0.1.2.tgz |
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