SMAHP: Survival Mediation Analysis of High-Dimensional Proteogenomic Data
SMAHP (pronounced as SOO-MAP) is a novel multi-omics framework for causal mediation analysis of high-dimensional proteogenomic data with survival outcomes. The full methodological details can be found in our recent preprint by Ahn S et al. (2025) <doi:10.48550/arXiv.2503.08606>.
| Version: | 0.0.5 |
| Depends: | R (≥ 3.5.0) |
| Imports: | data.table, fdrtool, ncvreg, penAFT, survival, stats, glmnet |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-03-24 |
| DOI: | 10.32614/CRAN.package.SMAHP |
| Author: | Seungjun Ahn 
[aut],
Weijia Fu [cre,
aut],
Zhigang Li [ctb] |
| Maintainer: | Weijia Fu <weijia.fu at mountsinai.org> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Language: | en-US |
| CRAN checks: | SMAHP results |
Documentation:
| Reference manual: | SMAHP.html , SMAHP.pdf |
| Vignettes: |
SMAHP (source, R code) |
Downloads:
| Package source: | SMAHP_0.0.5.tar.gz |
| Windows binaries: | r-devel: SMAHP_0.0.5.zip, r-release: SMAHP_0.0.5.zip, r-oldrel: SMAHP_0.0.5.zip |
| macOS binaries: | r-release (arm64): SMAHP_0.0.5.tgz, r-oldrel (arm64): SMAHP_0.0.5.tgz, r-release (x86_64): SMAHP_0.0.5.tgz, r-oldrel (x86_64): SMAHP_0.0.5.tgz |
Linking:
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