SCORPION: Single Cell Oriented Reconstruction of PANDA Individually Optimized Networks
Constructs cell-type–specific gene regulatory networks from single-cell RNA-sequencing data. The method implements the SCORPION algorithm, which first aggregates individual cells into super-cells and then applies PANDA (Passing Attributes between Networks for Data Assimilation) to infer transcription factor–target regulatory relationships. It also provides statistical methods for differential edge analysis.
| Version: | 1.3.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | cli, methods, irlba, igraph, RANN, Matrix, pbapply, dplyr, furrr, future |
| Suggests: | RhpcBLASctl, testthat |
| Published: | 2026-03-10 |
| DOI: | 10.32614/CRAN.package.SCORPION |
| Author: | Daniel Osorio 
[aut, cre],
Marieke L. Kuijjer
[aut] |
| Maintainer: | Daniel Osorio <daniecos at uio.no> |
| BugReports: | https://github.com/kuijjerlab/SCORPION/issues |
| License: | GPL-3 |
| URL: | https://github.com/kuijjerlab/SCORPION |
| NeedsCompilation: | no |
| CRAN checks: | SCORPION results |
Documentation:
| Reference manual: | SCORPION.html , SCORPION.pdf |
Downloads:
| Package source: | SCORPION_1.3.2.tar.gz |
| Windows binaries: | r-devel: SCORPION_1.3.2.zip, r-release: SCORPION_1.3.2.zip, r-oldrel: SCORPION_1.3.2.zip |
| macOS binaries: | r-release (arm64): SCORPION_1.3.2.tgz, r-oldrel (arm64): SCORPION_1.3.2.tgz, r-release (x86_64): SCORPION_1.3.2.tgz, r-oldrel (x86_64): SCORPION_1.3.2.tgz |
| Old sources: | SCORPION archive |
Linking:
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