SCIproj 1.0.0

Breaking changes

• use_pipe now defaults to FALSE. The native pipe operator |> (available since R 4.1.0) is recommended instead of the magrittr pipe %>%.
• CI options "travis", "circle", and "appveyor" have been removed. Only "gh-actions" (GitHub Actions) is supported.
• Minimum R version raised to >= 4.1.0 (from 3.5.0).
• License functions now use copyright_holder parameter (matching usethis >= 2.0).
• use_renv and use_targets now default to TRUE — projects are workflow-oriented by default.
• open_proj now defaults to FALSE — open the .Rproj file manually after creation to avoid RStudio session conflicts.

New features (FAIR / Open Science)

• CITATION.cff is now generated automatically with project name, author, and optional ORCID — making projects machine-readable and citable.
• New orcid parameter for including the author’s ORCID iD in CITATION.cff.
• DATA_SOURCES.md template added to data-raw/ for documenting data provenance (source, license, download date, DOI).
• CONTRIBUTING.md template added to every project.
• GitHub Actions workflow template (R CMD check + optional targets pipeline) included when ci = "gh-actions".

New features (workflow)

• New use_git parameter to initialize a local git repository without creating a GitHub repo.
• use_renv = TRUE (default) initializes renv with lockfile and .Rprofile bootstrap for dependency management (using snapshot.type = "explicit").
• use_targets = TRUE (default) adds a _targets.R pipeline template for reproducible workflow management.
• New use_docker parameter to add a Dockerfile template for reproducible computational environments.
• Input validation with match.arg() for add_license and ci parameters.
• The function now returns the project path invisibly.
• Project names with underscores or hyphens (e.g. "my_project") are now accepted — the R package name is auto-sanitized (e.g. my.project in DESCRIPTION). New helper sanitize_pkg_name().
• Updated _targets.R template with tar_source(), numbered steps matching the official targets manual, and format = "file" example.

RStudio integration fixes

• Suppressed create_package() from triggering RStudio’s “switch project?” dialog by deferring .Rproj file creation.
• Suppressed use_git() interactive prompts (commit confirmation, session restart) via rlang_interactive = FALSE.
• Added restart = FALSE to renv::init() to prevent RStudio session restart during project creation.
• Conditional setwd handling: setwd = FALSE in RStudio (avoids project switch dialog), setwd = TRUE outside RStudio (required for usethis functions under R CMD check).
• Non-interactive fallback: create_package() failures in terminal/Rscript sessions are caught with tryCatch and fall back to manual package structure creation.
• Library paths are saved and restored around renv::init() to prevent rstudioapi and other packages from becoming unavailable.

Bug fixes

• Fixed copy-paste error in @param add_license documentation.
• Fixed @param ci incorrectly documented as “Logical” (is Character).
• Fixed examples using old parameter names (github, private.repo).
• Fixed @details referencing old parameter name github.
• Removed placeholder text in DESCRIPTION.
• Removed redundant Maintainer field (already specified via Authors@R).
• Removed LazyData: true (package contains no data).
• Fixed GitHub URL from /blob/master/ to /blob/main/.

Other improvements

• Updated usethis API calls: use_apl2_license() replaced with use_apache_license(), name parameter replaced with copyright_holder.
• License selection now uses switch() instead of repeated if statements.
• Options are now properly restored on exit via on.exit().
• Package license changed from CC BY 4.0 to MIT.
• Updated makefile template to reference Quarto and targets.
• Updated README with FAIR principles, rOpenSci, TIER Protocol, and NASA TOPS references. Reorganized resources section.
• Added comprehensive test suite (testthat): directory structure, data_raw, targets, docker, input validation, CITATION.cff, name cleaning.

SCIproj 0.1.0

• Initial release with create_proj() function.