SAVER: Single-Cell RNA-Seq Gene Expression Recovery

An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) <doi:10.1038/s41592-018-0033-z> for more details.

Version:	1.1.2
Depends:	R (≥ 3.0.1)
Imports:	glmnet, foreach, methods, iterators, doParallel, Matrix
Suggests:	knitr, rmarkdown
Published:	2019-11-13
DOI:	10.32614/CRAN.package.SAVER
Author:	Mo Huang [aut, cre], Nancy Zhang [aut], Mingyao Li [aut]
Maintainer:	Mo Huang <mohuangx at gmail.com>
BugReports:	https://github.com/mohuangx/SAVER/issues
License:	GPL-2
URL:	https://github.com/mohuangx/SAVER
NeedsCompilation:	no
Citation:	SAVER citation info
Materials:	README, NEWS
In views:	MissingData
CRAN checks:	SAVER results

Documentation:

Reference manual:	SAVER.html , SAVER.pdf
Vignettes:	SAVER Tutorial (source, R code)

Downloads:

Package source:	SAVER_1.1.2.tar.gz
Windows binaries:	r-devel: SAVER_1.1.2.zip, r-release: SAVER_1.1.2.zip, r-oldrel: SAVER_1.1.2.zip
macOS binaries:	r-release (arm64): SAVER_1.1.2.tgz, r-oldrel (arm64): SAVER_1.1.2.tgz, r-release (x86_64): SAVER_1.1.2.tgz, r-oldrel (x86_64): SAVER_1.1.2.tgz
Old sources:	SAVER archive

Reverse dependencies:

Reverse imports:

ADImpute, scRecover

Linking:

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