Calculate network topology parameters from Operational Taxonomic Unit (OTU) tables with customizable correlation thresholds, parallel processing options, and visualization capabilities including trend fitting, prediction of future sample sizes, and lag-1 autocorrelation (AR1) analysis. Methods are based on co-occurrence network construction via correlation thresholds and graph-theoretic metrics computed with 'igraph'.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | igraph, Hmisc, parallel, ggplot2, grDevices, graphics, rlang, stats, utils |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2026-05-28 |
| DOI: | 10.32614/CRAN.package.SAFEMCN |
| Author: | Xiaotong Xu [aut, cre], Yue Zheng [cph] |
| Maintainer: | Xiaotong Xu <xxt19992014 at 163.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | SAFEMCN results |
| Reference manual: | SAFEMCN.html , SAFEMCN.pdf |
| Package source: | SAFEMCN_1.0.0.tar.gz |
| Windows binaries: | r-devel: SAFEMCN_1.0.0.zip, r-release: SAFEMCN_1.0.0.zip, r-oldrel: SAFEMCN_1.0.0.zip |
| macOS binaries: | r-release (arm64): SAFEMCN_1.0.0.tgz, r-oldrel (arm64): SAFEMCN_1.0.0.tgz, r-release (x86_64): SAFEMCN_1.0.0.tgz, r-oldrel (x86_64): SAFEMCN_1.0.0.tgz |
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